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Change-Id: Ic9e83486f7ab7f0e7075343af630c4dcecf597b5 --- gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) base-commit: da1f3aff2ea9a98651ebc69c8385ba136fe2e325 diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cdda029809..e2632a5aa4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11534,6 +11534,43 @@ (define-public r-chromunity Pore-C concatemers.") (license license:gpl3)))) +(define-public r-cmdstanr + (let ((commit "a45d4f7d686aa6b57ce25f342a71eea79507f01c") + (revision "1")) + (package + (name "r-cmdstanr") + (version (git-version "0.8.1.9000" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/stan-dev/cmdstanr") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "01vyh3sy704rs7yvaka2hp6vld0mdl7hbrs20dpbwidgm4ksrvsi")))) + (properties `((upstream-name . "cmdstanr"))) + (build-system r-build-system) + (propagated-inputs (list r-checkmate + r-data-table + r-jsonlite + r-posterior + r-processx + r-r6 + r-rlang + r-withr)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/stan-dev/cmdstanr") + (synopsis "R interface to 'CmdStan'") + (description + "This package provides a lightweight interface to Stan . +The @code{CmdStanR} interface is an alternative to RStan that calls the command +line interface for compilation and running algorithms instead of interfacing +with C++ via Rcpp'. This has many benefits including always being compatible +with the latest version of Stan, fewer installation errors, fewer unexpected +crashes in RStudio, and a more permissive license.") + (license license:bsd-3)))) + (define-public r-dnamcrosshyb ;; There aren't any releases. (let ((commit "fe8acb33667e81f00dcb84e0fa75c87ab2db5d8f")