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Change-Id: I83e82d3d0362874918f423ab01f038c74f3eb265 --- gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++ 1 file changed, 38 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 11ed82bc58..a8fa9d7af4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -22512,6 +22512,44 @@ (define-public r-bayesspace features such as gene expression or cell type composition can be imputed.") (license license:expat))) +(define-public r-baynorm + (package + (name "r-baynorm") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "bayNorm" version)) + (sha256 + (base32 "01lv4w1x43x3f9sdrqikhsr1gdvkgqzrgcd9wnjj76qsljn57ifq")))) + (properties `((upstream-name . "bayNorm"))) + (build-system r-build-system) + (propagated-inputs + (list r-bb + r-biocparallel + r-dosnow + r-fitdistrplus + r-foreach + r-iterators + r-locfit + r-mass + r-matrix + r-rcpp + r-rcpparmadillo + r-rcppprogress + r-singlecellexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/WT215/bayNorm") + (synopsis "Single-cell RNA sequencing data normalization") + (description + "The bayNorm package is used for normalizing single-cell RNA-seq data. The +main function is bayNorm, which is a wrapper function for gene specific prior +parameter estimation and normalization. The input is a matrix of scRNA-seq data +with rows different genes and coloums different cells. The output is either +point estimates from posterior (2D array) or samples from posterior (3D array).") + (license license:gpl2+))) + (define-public r-biocthis (package (name "r-biocthis")