| Message ID | d110c65581b1b40e1ba3524732ffd17b66b0011b.camel@gnu.org |
|---|---|
| State | Accepted |
| Headers | show |
| Series | [bug#47826] gnu: Update blast+ to 2.11.0. | expand |
| Context | Check | Description |
|---|---|---|
| cbaines/submitting builds | success | |
| cbaines/comparison | success | View comparision |
| cbaines/git branch | success | View Git branch |
| cbaines/applying patch | fail | View Laminar job |
| cbaines/issue | success | View issue |
On Fri, Apr 16, 2021 at 01:22:59PM +0200, Roel Janssen wrote: > Hi Guix, > > Here's a patch to update blast+ to 2.11.0. > > Kind regards, > Roel Janssen > > From 92d8f8602a285fc3ed61656c314a697cd87ae4f4 Mon Sep 17 00:00:00 2001 > From: Roel Janssen <roel@gnu.org> > Date: Fri, 16 Apr 2021 13:20:53 +0200 > Subject: [PATCH] gnu: Update blast+ to 2.11.0. > > * gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0. LGTM, assuming the packages the depend on it still build.
Hi Leo, On Fri, 2021-04-16 at 12:37 -0400, Leo Famulari wrote: > On Fri, Apr 16, 2021 at 01:22:59PM +0200, Roel Janssen wrote: > > Hi Guix, > > > > Here's a patch to update blast+ to 2.11.0. > > > > Kind regards, > > Roel Janssen > > > > > From 92d8f8602a285fc3ed61656c314a697cd87ae4f4 Mon Sep 17 00:00:00 > > 2001 > > From: Roel Janssen <roel@gnu.org> > > Date: Fri, 16 Apr 2021 13:20:53 +0200 > > Subject: [PATCH] gnu: Update blast+ to 2.11.0. > > > > * gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0. > > LGTM, assuming the packages the depend on it still build. > Let's see if I got this right: $ ./pre-inst-env guix refresh --list-dependent blast+ /home/roel/Programming/guix/gnu/packages/bioinformatics.go Building the following 2 packages would ensure 2 dependent packages are rebuilt: roary@3.12.0 proteinortho@6.0.14 So I built roary and proteinortho with the blast+ patch applied, and both build fine. Can I conclude from this that packages depending on blast+ still build fine? Kind regards, Roel Janssen
On Fri, Apr 16, 2021 at 08:14:27PM +0200, Roel Janssen wrote: > Let's see if I got this right: > $ ./pre-inst-env guix refresh --list-dependent blast+ > /home/roel/Programming/guix/gnu/packages/bioinformatics.go > Building the following 2 packages would ensure 2 dependent packages are > rebuilt: roary@3.12.0 proteinortho@6.0.14 > > So I built roary and proteinortho with the blast+ patch applied, and > both build fine. > > Can I conclude from this that packages depending on blast+ still build > fine? Yes, exactly! Thanks for testing and please push :)
On Fri, 2021-04-16 at 14:22 -0400, Leo Famulari wrote: > On Fri, Apr 16, 2021 at 08:14:27PM +0200, Roel Janssen wrote: > > Let's see if I got this right: > > $ ./pre-inst-env guix refresh --list-dependent blast+ > > /home/roel/Programming/guix/gnu/packages/bioinformatics.go > > Building the following 2 packages would ensure 2 dependent packages > > are > > rebuilt: roary@3.12.0 proteinortho@6.0.14 > > > > So I built roary and proteinortho with the blast+ patch applied, > > and > > both build fine. > > > > Can I conclude from this that packages depending on blast+ still > > build > > fine? > > Yes, exactly! Thanks for testing and please push :) > Thank you for your help! I pushed this patch in c3926120ba5ea76f531541b7926ccb6739575e0e. Kind regards, Roel Janssen
From 92d8f8602a285fc3ed61656c314a697cd87ae4f4 Mon Sep 17 00:00:00 2001 From: Roel Janssen <roel@gnu.org> Date: Fri, 16 Apr 2021 13:20:53 +0200 Subject: [PATCH] gnu: Update blast+ to 2.11.0. * gnu/packages/bioinformatics.scm (blast+): Update to 2.11.0. --- gnu/packages/bioinformatics.scm | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 41ef4cd513..31205c473a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1363,7 +1363,7 @@ package provides command line tools using the Bio++ library.") (define-public blast+ (package (name "blast+") - (version "2.10.1") + (version "2.11.0") (source (origin (method url-fetch) (uri (string-append @@ -1371,7 +1371,7 @@ package provides command line tools using the Bio++ library.") version "/ncbi-blast-" version "+-src.tar.gz")) (sha256 (base32 - "11kvrrl0mcwww6530r55hccpg3x3msmhr3051fwnjbq8rzg2j1qi")) + "0m0r9vkw631ky1za1wilsfk9k9spwqh22nkrb9a57rbwmrc1i3nq")) (modules '((guix build utils))) (snippet '(begin -- 2.30.2