@@ -4848,7 +4848,7 @@ (define-public jc
(lambda _
(substitute* (find-files "tests" "^test.*\\.py$")
(("America/Los_Angeles") "PST8PDT")))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-pygments python-ruamel.yaml python-xmltodict))
(home-page "https://github.com/kellyjonbrazil/jc")
@@ -521,7 +521,8 @@ (define-public python-astroml
(propagated-inputs (list python-astropy python-matplotlib python-numpy
python-scikit-learn python-scipy))
(native-inputs (list python-pytest-astropy-header python-pytest-cov
- python-pytest-doctestplus python-pytest-remotedata))
+ python-pytest-doctestplus python-pytest-remotedata
+ python-setuptools python-wheel))
(home-page "https://astroml.org")
(synopsis "Tools for machine learning and data mining in astronomy")
(description "This package provides tools for machine learning and data
@@ -613,7 +614,8 @@ (define-public python-gatspy
;; XXX: we don't have supersmoother
" and not test_supersmoother.py"))))
(propagated-inputs (list python-astroml python-numpy python-scipy))
- (native-inputs (list python-pytest python-nose python-setuptools-scm))
+ (native-inputs (list python-pytest python-nose python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/astroml/gatspy")
(synopsis "General tools for astronomical time series in Python")
(description "This package provides general tools for astronomical time
@@ -1470,7 +1472,9 @@ (define-public python-astropy-healpix
(list python-extension-helpers
python-hypothesis
python-pytest-astropy
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-astropy python-numpy))
(home-page "https://github.com/astropy/astropy-healpix")
@@ -1553,7 +1557,9 @@ (define-public python-astroscrappy
python-pytest-astropy
python-scikit-image
python-scipy
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-astropy python-numpy))
(home-page "https://github.com/astropy/astroscrappy")
(synopsis "Speedy Cosmic Ray Annihilation Package in Python")
@@ -1651,7 +1657,9 @@ (define-public python-cdflib
python-pytest
python-pytest-cov
python-pytest-remotedata
- python-xarray))
+ python-xarray
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/MAVENSDC/cdflib")
(synopsis "Python library to deal with NASA's CDF astronmical data format")
(description "This package provides a Python @acronym{CDF, Computable
@@ -1741,7 +1749,9 @@ (define-public python-czml3
(list python-astropy
python-pytest
python-pytest-cov
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/poliastro/czml3")
(synopsis "Python library to write CZML")
(description
@@ -1818,9 +1828,10 @@ (define-public python-drizzle
;; Cython extensions have to be built before running
;; the tests.
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
- (propagated-inputs (list python-astropy python-numpy))
+ (propagated-inputs (list python-astropy python-numpy python-setuptools))
(native-inputs (list python-coverage python-flake8 python-pytest
- python-pytest-cov python-setuptools-scm))
+ python-pytest-cov python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/spacetelescope/drizzle")
(synopsis
"Astronomical tool for combining dithered images into a single image")
@@ -1871,7 +1882,8 @@ (define-public python-hvpy
(arguments
(list #:tests? #f)) ; Requires HTTP(S) access to api.beta.helioviewer.org
(propagated-inputs (list python-pydantic python-requests))
- (native-inputs (list python-pytest python-pytest-astropy))
+ (native-inputs (list python-pytest python-pytest-astropy python-setuptools
+ python-wheel))
(home-page "https://helioviewer.org/")
(synopsis "Helioviewer Python API Wrapper")
(description "@code{hvpy} is a Python API wrapper around the formal
@@ -1892,7 +1904,9 @@ (define-public python-mpl-animators
(native-inputs
(list python-pytest
python-pytest-mpl
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-astropy
python-matplotlib
@@ -2039,7 +2053,9 @@ (define-public python-poppy
python-pytest
python-pytest-astropy
python-sphinx
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://poppy-optics.readthedocs.io/")
(synopsis "Physical Optics Propagation in Python")
(description
@@ -2069,7 +2085,8 @@ (define-public python-pyvo
(base32 "17acv1yhz1jrsx9f35nr1vg276ibaivh4i243qkmp6abzvfyg907"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest-astropy python-requests-mock python-setuptools-scm))
+ (list python-pytest-astropy python-requests-mock python-setuptools-scm
+ python-setuptools python-wheel))
(propagated-inputs
(list python-astropy python-mimeparse python-pillow python-requests))
(home-page "https://github.com/astropy/pyvo")
@@ -2405,8 +2422,9 @@ (define-public python-stsci-image
;; the tests.
(invoke "python" "setup.py" "build_ext"
"--inplace"))))))
- (propagated-inputs (list python-numpy python-scipy))
- (native-inputs (list python-pytest python-setuptools-scm))
+ (propagated-inputs (list python-numpy python-scipy python-setuptools))
+ (native-inputs (list python-pytest python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/spacetelescope/stsci.image")
(synopsis "Image array manipulation functions")
(description
@@ -2456,7 +2474,8 @@ (define-public python-stsci-stimage
#:tests? #f))
(propagated-inputs (list python-numpy))
(native-inputs (list python-codecov python-pytest python-pytest-cov
- python-setuptools-scm))
+ python-setuptools python-setuptools-scm
+ python-wheel))
(home-page "https://stscistimage.readthedocs.io/en/latest/")
(synopsis "STScI image processing")
(description "This package provides an astronomical Python package with
@@ -2486,7 +2505,9 @@ (define-public python-stcal
python-pytest-cov
python-pytest-doctestplus
python-pytest-openfiles
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/spacetelescope/stcal")
(synopsis "STScI tools and algorithms used in calibration pipelines")
(description "STScI tools and algorithms used in calibration pipelines.")
@@ -3296,7 +3317,9 @@ (define-public python-pynbody
(native-inputs
(list python-cython
python-pandas
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-h5py
python-matplotlib
@@ -3328,9 +3351,10 @@ (define-public python-pysynphot
(setenv "PYSYN_CDBS"
(string-append #$output "/crds")))))))
(native-inputs (list python-pytest python-pytest-remotedata
- python-setuptools-scm))
+ python-setuptools-scm python-wheel))
(propagated-inputs (list python-astropy python-beautifulsoup4 python-numpy
- python-pytest-astropy-header python-six))
+ python-pytest-astropy-header python-six
+ python-setuptools))
(home-page "https://github.com/spacetelescope/pysynphot")
(synopsis "Python Synthetic Photometry Utilities")
(description
@@ -3396,7 +3420,7 @@ (define-public python-synphot
#:tests? #f))
(propagated-inputs (list python-astropy python-numpy python-scipy))
(native-inputs (list python-pytest python-pytest-astropy
- python-setuptools-scm))
+ python-setuptools-scm python-setuptools python-wheel))
(home-page "https://github.com/spacetelescope/synphot_refactor")
(synopsis "Synthetic photometry using Astropy")
(description
@@ -3467,7 +3491,9 @@ (define-public python-asdf
python-pytest-openfiles
python-pytest-remotedata
python-semantic-version
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-asdf-standard
python-asdf-transform-schemas
@@ -3514,7 +3540,9 @@ (define-public python-asdf-standard
python-pypa-build
python-pytest
python-packaging
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-importlib-resources))
(home-page "https://asdf-standard.readthedocs.io/")
(synopsis "ASDF standard schemas")
@@ -3542,7 +3570,7 @@ (define python-asdf-transform-schemas
(arguments
;; Dependency cycle with python-asdf
(list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-asdf-standard python-importlib-resources))
(home-page "https://github.com/asdf-format/asdf-transform-schemas")
(synopsis "ASDF schemas for transforms")
@@ -3661,7 +3689,7 @@ (define python-asdf-unit-schemas
(arguments
;; Dependency cycle with python-asdf
(list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-asdf-standard python-importlib-resources))
(home-page "https://asdf-unit-schemas.readthedocs.io/")
(synopsis "ASDF serialization schemas for the units defined by @code{astropy.units}")
@@ -3903,9 +3931,10 @@ (define-public python-wiimatch
(base32
"0x6p5z6a2cqinckwlpinjxagvmswl149s1jn6ihmdxk4k0h8rrz0"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-numpy python-scipy))
+ (propagated-inputs (list python-numpy python-scipy python-setuptools))
(native-inputs (list python-codecov python-pytest python-pytest-cov
- python-pytest-doctestplus python-setuptools-scm))
+ python-pytest-doctestplus python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/spacetelescope/wiimatch")
(synopsis
"Optimal matching of weighted N-dimensional image intensity data")
@@ -1401,7 +1401,8 @@ (define-public python-bcbio-gff
(base32
"1pm1szyxabhn8jismrj9cjhf88ajgcmm39f0cgf36iagw5qakprl"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-biopython python-six))
+ (propagated-inputs (list python-biopython python-six python-setuptools
+ python-wheel))
(native-inputs (list python-pytest))
(home-page "https://github.com/chapmanb/bcbb/tree/master/gff")
(synopsis "Read and write GFF files with Biopython integration")
@@ -1526,7 +1527,7 @@ (define-public python-bulkvis
python-tornado-6
python-tqdm
python-umap-learn))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/LooseLab/bulkVis")
(synopsis "Interactive visualization of bulk RNA-seq data")
(description
@@ -1765,7 +1766,8 @@ (define-public python-demuxem
python-scikit-learn
python-scipy
python-seaborn))
- (native-inputs (list python-cython python-setuptools-scm))
+ (native-inputs (list python-cython python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/lilab-bcb/demuxEM")
(synopsis "Analyze cell-hashing/nucleus-hashing data")
(description
@@ -1838,6 +1840,7 @@ (define-public python-hclust2
python-numpy
python-pandas
python-scipy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/SegataLab/hclust2/")
(synopsis "Plotting heat-maps for publications")
(description
@@ -1857,7 +1860,7 @@ (define-public python-htsget
"111q4pzkav26aa3hkgh948wqlyrq7dq6sjml9z63n3blw8s6b0c4"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm))
+ (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs
(list python-humanize python-requests python-six))
(home-page "https://pypi.org/project/htsget/")
@@ -1935,6 +1938,7 @@ (define-public python-logomaker
(build-system pyproject-build-system)
(propagated-inputs
(list python-matplotlib python-numpy python-pandas))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://logomaker.readthedocs.io")
(synopsis "Package for making Sequence Logos")
(description "Logomaker is a Python package for generating
@@ -1968,7 +1972,8 @@ (define-public python-pegasusio
python-pillow
python-scipy
python-zarr))
- (native-inputs (list python-cython python-setuptools-scm))
+ (native-inputs (list python-cython python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/lilab-bcb/pegasusio")
(synopsis "Read or write single-cell genomics data")
(description
@@ -2027,7 +2032,7 @@ (define-public python-phenograph
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/dpeerlab/PhenoGraph.git")
(synopsis "Graph-based clustering for high-dimensional single-cell data")
(description
@@ -2058,6 +2063,7 @@ (define-public python-phylophlan
python-numpy
python-pandas
python-seaborn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/biobakery/phylophlan")
(synopsis
"Phylogenetic analysis of microbial isolates and genomes from metagenomes")
@@ -2137,6 +2143,8 @@ (define-public python-pybedtools
python-cython
kentutils ; for bedGraphToBigWig
python-six
+ python-setuptools
+ python-wheel
;; For the test suite.
python-pytest
python-psutil))
@@ -2330,6 +2338,7 @@ (define-public python-readpaf
"15m6ffks4zwpp1ycwk6n02py6mw2yh7qr0vhpc178b91gldr97ia"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-pandas))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/alexomics/read-paf")
(synopsis "Minimap2 PAF file reader")
(description
@@ -2442,6 +2451,7 @@ (define-public python-biopython
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
(list python-numpy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://biopython.org/")
(synopsis "Tools for biological computation in Python")
(description
@@ -3494,7 +3504,8 @@ (define-public python-bx-python
(inputs
(list zlib))
(native-inputs
- (list python-cython python-lzo python-pytest))
+ (list python-cython python-lzo python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/bxlab/bx-python")
(synopsis "Tools for manipulating biological data")
(description
@@ -3656,6 +3667,8 @@ (define-public python-pysam
(native-inputs
(list python-cython
python-pytest
+ python-setuptools
+ python-wheel
;; Dependencies below are are for tests only.
samtools
bcftools))
@@ -3734,6 +3747,8 @@ (define-public python-plastid
(native-inputs
`(("python-cython" ,python-cython)
("python-nose" ,python-nose)
+ ("python-setuptools" ,python-setuptools)
+ ("python-wheel" ,python-wheel)
("test-data"
,(origin
(method url-fetch)
@@ -4061,7 +4076,8 @@ (define-public python-dnaio
(arguments
(list #:tests? #false)) ;there are none
(native-inputs
- (list python-cython python-pytest python-setuptools-scm))
+ (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(propagated-inputs
(list python-xopen))
(home-page "https://github.com/marcelm/dnaio/")
@@ -4239,6 +4255,7 @@ (define-public python-pybigwig
(list python-numpy))
(inputs
(list libbigwig zlib curl))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/dpryan79/pyBigWig")
(synopsis "Access bigWig files in Python using libBigWig")
(description
@@ -4277,9 +4294,11 @@ (define-public python-schema-salad
python-rdflib-jsonld
python-requests
python-ruamel.yaml
+ python-setuptools ; For pkg_resources.
python-typing-extensions))
(native-inputs
- (list python-black python-pytest python-pytest-runner))
+ (list python-black python-pytest python-pytest-runner
+ python-wheel))
(home-page "https://github.com/common-workflow-language/schema_salad")
(synopsis "Schema Annotations for Linked Avro Data (SALAD)")
(description
@@ -4380,6 +4399,7 @@ (define-public python-scrublet
python-scikit-learn
python-scipy
python-umap-learn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/swolock/scrublet")
(synopsis "Tool to indentify and remove doublets in single-cell data")
(description "This package provides a tool for identifying and removing
@@ -4456,6 +4476,7 @@ (define-public cwltool
python-requests
python-ruamel.yaml
python-schema-salad
+ python-setuptools ; For pkg_resources.
python-shellescape
python-typing-extensions
;; Not listed as needed but still necessary:
@@ -4467,7 +4488,8 @@ (define-public cwltool
python-pytest
python-pytest-cov
python-pytest-mock
- python-pytest-runner))
+ python-pytest-runner
+ python-wheel))
(home-page
"https://github.com/common-workflow-language/common-workflow-language")
(synopsis "Common Workflow Language reference implementation")
@@ -4521,7 +4543,8 @@ (define-public python-dendropy
(substitute* "tests/test_datamodel_taxon.py"
(("collections.Iterable")
"collections.abc.Iterable")))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-wheel))
+ (propagated-inputs (list python-setuptools))
(home-page "https://dendropy.org/")
(synopsis "Library for phylogenetics and phylogenetic computing")
(description
@@ -5115,7 +5138,8 @@ (define-public python-bamnostic
(base32
"0cjpzyqz6r4lmiwry2gcxdczwpkhl3lyyjg4s8addln17691ysxk"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-pytest))
+ (propagated-inputs (list python-pytest python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/betteridiot/bamnostic/")
(synopsis "Tool for binary alignment map, random access and parsing")
(description
@@ -5213,7 +5237,7 @@ (define-public python-ete3
python-pyqt
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "http://etetoolkit.org")
(synopsis "Python environment for phylogenetic tree exploration")
(description
@@ -5234,6 +5258,7 @@ (define-public python-illumina-utils
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
(propagated-inputs (list python-matplotlib python-numpy python-levenshtein))
+ (native-inputs (list python-setuptools python-wheel python-pip))
(home-page "https://github.com/meren/illumina-utils")
(synopsis "Library and scripts to work with Illumina paired-end data")
(description
@@ -5255,6 +5280,7 @@ (define-public python-pyani
(propagated-inputs
(list python-biopython python-matplotlib python-pandas
python-scipy python-seaborn))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://widdowquinn.github.io/pyani/")
(synopsis "Calculate genome-scale average nucleotide identity")
(description
@@ -8607,7 +8633,9 @@ (define-public python-screed
(build-system pyproject-build-system)
(native-inputs
(list python-pytest-cov
- python-pytest-runner))
+ python-pytest-runner
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/dib-lab/screed/")
(synopsis "Short read sequence database utilities")
(description "Screed parses FASTA and FASTQ files and generates databases.
@@ -8949,7 +8977,7 @@ (define-public seqmagick
(inputs
(list python-biopython python-pygtrie))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/fhcrc/seqmagick")
(synopsis "Tools for converting and modifying sequence files")
(description
@@ -11672,10 +11700,12 @@ (define-public multiqc
python-requests
python-rich
python-rich-click
+ python-setuptools ; For pkg_resources.
python-simplejson
python-spectra))
(native-inputs
`(("python-pytest" ,python-pytest)
+ ("python-wheel" ,python-wheel)
("tests"
,(let ((commit "c3e7400affe3f3ca996973805797af61b93070ba"))
(origin
@@ -13301,9 +13331,10 @@ (define-public python-goatools
python-pydot
python-requests
python-scipy
+ python-setuptools
python-statsmodels
python-xlsxwriter))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-wheel))
(home-page "https://github.com/tanghaibao/goatools")
(synopsis "Python scripts to find enrichment of GO terms")
(description "Python scripts to find enrichment of GO terms. In addition,
@@ -13419,9 +13450,10 @@ (define-public python-mgatk
python-pysam
python-regex
python-ruamel.yaml
+ python-setuptools
snakemake))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-wheel))
(home-page "https://github.com/caleblareau/mgatk")
(synopsis "Mitochondrial genome analysis toolkit.")
(description "This package is a Python-based command line interface for
@@ -15658,6 +15690,7 @@ (define-public python-scanpy
python-patsy
python-scikit-learn
python-scipy
+ python-setuptools ; For pkg_resources.
python-seaborn
python-session-info
python-sinfo
@@ -16008,7 +16041,9 @@ (define-public python-pyfaidx
python-mock
python-numpy
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-wheel))
+ (propagated-inputs (list python-setuptools))
(home-page "http://mattshirley.com")
(synopsis "Random access to fasta subsequences")
(description
@@ -16174,7 +16209,7 @@ (define-public python-hicmatrix
python-scipy
python-tables))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/deeptools/HiCMatrix/")
(synopsis "HiCMatrix class for HiCExplorer and pyGenomeTracks")
(description
@@ -17038,6 +17073,7 @@ (define-public cnvkit
python-scipy
;; R packages
r-dnacopy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://cnvkit.readthedocs.org/")
(synopsis "Copy number variant detection from targeted DNA sequencing")
(description
@@ -19146,7 +19182,9 @@ (define-public python-cgatcore
(list python-pytest
lsof
inetutils
- openssl))
+ openssl
+ python-setuptools
+ python-wheel))
(inputs (list time))
(propagated-inputs
(list python-apsw
@@ -19647,6 +19685,7 @@ (define-public python-dna-features-viewer
(list python-biopython
python-matplotlib
python-packaging))
+ (native-inputs (list python-setuptools python-wheel))
(home-page
"https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer")
(synopsis "Plot features from DNA sequences")
@@ -69,6 +69,7 @@ (define-module (gnu packages bootloaders)
#:use-module (gnu packages valgrind)
#:use-module (gnu packages virtualization)
#:use-module (gnu packages xorg)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (guix build-system gnu)
@@ -676,6 +677,8 @@ (define u-boot
pkg-config ;for 'make menuconfig'
python
python-pyelftools
+ python-setuptools
+ python-wheel
swig
(list util-linux "lib")))
(home-page "https://www.denx.de/wiki/U-Boot/")
@@ -833,7 +833,7 @@ (define-public python-gixy
(base32
"0gymjcnvjx9snyrzdbmjnk93ibb161q72xam29vnl3yyac4r1330"))))
(build-system pyproject-build-system)
- (native-inputs (list python-nose))
+ (native-inputs (list python-nose python-setuptools python-wheel))
(propagated-inputs
(list python-cached-property python-configargparse
python-jinja2 python-six
@@ -1705,7 +1705,8 @@ (define-public python-pytest-forked
;; 'hypothesis' plugin is not in the environment (due to
;; <http://issues.guix.gnu.org/25235>), which would cause the test suite
;; to fail (see: https://github.com/pytest-dev/pytest-forked/issues/54).
- (list python-pytest-bootstrap python-setuptools-scm))
+ (list python-pytest-bootstrap python-setuptools
+ python-setuptools-scm python-wheel))
(home-page "https://github.com/pytest-dev/pytest-forked")
(synopsis "Pytest plugin to run tests in isolated forked subprocesses")
(description "This package provides a Pytest plugin which enables running
@@ -2030,7 +2031,7 @@ (define-public python-pytest-asyncio
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
#$(package-version this-package)))))))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-pytest))
(home-page "https://github.com/pytest-dev/pytest-asyncio")
(synopsis "Pytest support for asyncio")
@@ -2467,7 +2468,9 @@ (define-public python-pytest-mypy-plugins
python-mypy
python-pytest
python-pyyaml
+ python-setuptools
python-regex))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/TypedDjango/pytest-mypy-plugins")
(synopsis "Pytest plugin for writing tests for mypy plugins")
(description "This package provides a pytest plugin for writing tests for
@@ -3062,6 +3062,7 @@ (define-public python-aiomysql
(build-system pyproject-build-system)
(arguments '(#:tests? #f)) ;test suite requires docker
(propagated-inputs (list python-pymysql))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/aio-libs/aiomysql")
(synopsis "MySQL driver for Python")
(description "@code{aiomysql} is a driver for accessing a MySQL database
@@ -3452,7 +3453,8 @@ (define-public python-sqlalchemy
(build-system pyproject-build-system)
(native-inputs
(list python-cython ; for C extensions
- python-pytest python-mock python-pytest-xdist)) ; for tests
+ python-pytest python-mock python-pytest-xdist ; for tests
+ python-setuptools python-wheel))
(propagated-inputs
(list python-greenlet))
(arguments
@@ -3646,7 +3648,7 @@ (define-public python-sqlite-utils
(propagated-inputs (list python-click python-click-default-group
python-dateutil python-sqlite-fts4
python-tabulate))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/simonw/sqlite-utils")
(synopsis
"CLI tool and Python utility functions for manipulating SQLite databases")
@@ -3719,7 +3721,7 @@ (define-public python-apsw
"02sgja00azvd08wi2wm105apmhp2644s7aw9b1zdg3dkcwjnsiad"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-cython unzip))
+ (list python-cython unzip python-setuptools python-wheel))
(inputs (list sqlite-next)) ;SQLite 3.40 required.
(arguments
(list
@@ -4039,7 +4041,7 @@ (define-public python-hiredis
;; The fix was forwarded upstream, see:
;; https://github.com/redis/hiredis-py/pull/160.
(delete-file "tests/__init__.py"))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(inputs (list hiredis))
(home-page "https://github.com/redis/hiredis-py")
(synopsis "Python extension that wraps protocol parsing code in hiredis")
@@ -4131,6 +4133,8 @@ (define-public python-redis
(list python-pytest
python-pytest-asyncio
python-pytest-timeout
+ python-setuptools
+ python-wheel
redis))
(propagated-inputs
(list python-async-timeout))
@@ -123,7 +123,7 @@ (define-public python-xxhash
"1hdxcscry59gh0znlm71ya23mm9rfmvz8lvvlplzxzf63pib28dc"))))
(build-system pyproject-build-system)
;; Needed to embed the correct version string
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(home-page "https://github.com/ifduyue/python-xxhash")
(synopsis "Python binding for xxHash")
(description "This package provides Python bindings for the xxHash hash
@@ -2530,7 +2530,7 @@ (define-public python-pyvisa
(substitute* "pyvisa/shell.py"
(("from .thirdparty import prettytable")
"import prettytable")))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs (list python-dataclasses python-prettytable
python-typing-extensions))
(home-page "https://pyvisa.readthedocs.io/en/latest/")
@@ -491,7 +491,8 @@ (define-public python-ufo2ft
(sha256
(base32 "1rg2997af8blvswlwif0kpz2vxrlh555gzqslz6yv9y7i7v8lphl"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-setuptools-scm))
+ (native-inputs (list python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(propagated-inputs
(list python-booleanoperations
python-cffsubr
@@ -638,7 +639,8 @@ (define-public python-glyphslib
"--ignore=tests/builder/interpolation_test.py")))
(native-inputs
(list python-setuptools-scm
-
+ python-setuptools
+ python-wheel
;; For tests.
python-pytest
python-xmldiff))
@@ -809,6 +811,7 @@ (define-public psautohint
python-pytest-cov
python-pytest-xdist
python-setuptools-scm
+ python-setuptools
python-wheel))
(home-page "https://github.com/adobe-type-tools/psautohint")
(synopsis "Adobe's PostScript autohinter")
@@ -1693,7 +1696,7 @@ (define-public python-ufolib2
(base32 "0yx4i8q5rfyqhr2fj70a7z1bp1jv7bdlr64ww9z4nv9ycbda4x9j"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest python-setuptools-scm python-setuptools python-wheel))
(propagated-inputs (list python-attrs python-fonttools))
(home-page "https://github.com/fonttools/ufoLib2")
(synopsis "Unified Font Object (UFO) font processing library")
@@ -351,7 +351,9 @@ (define-public python-h3
python-numpy
python-pytest
python-scikit-build
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(inputs (list h3))
(home-page "https://uber.github.io/h3-py")
(synopsis "Python bindings for H3")
@@ -959,7 +961,7 @@ (define-public python-geopandas
(list python-fiona python-packaging python-pandas python-pyproj
python-shapely))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://geopandas.org")
(synopsis "Geographic pandas extensions")
(description "The goal of GeoPandas is to make working with
@@ -1014,7 +1016,7 @@ (define-public python-osmnx
python-rtree
python-shapely))
(native-inputs
- (list python-numpy python-pytest))
+ (list python-numpy python-pytest python-setuptools python-wheel))
(home-page "https://github.com/gboeing/osmnx")
(synopsis
"Retrieve, model, analyze, and visualize OpenStreetMap street networks")
@@ -1801,7 +1803,7 @@ (define-public python-rtree
(string-append "\"" libspatialindex
"/lib/libspatialindex_c.so\"")))))))))
(native-inputs
- (list python-numpy python-pytest python-wheel))
+ (list python-numpy python-pytest python-setuptools python-wheel))
(inputs
(list libspatialindex))
(home-page "https://github.com/Toblerity/rtree")
@@ -185,7 +185,7 @@ (define-public python-igraph
(string-append igraph "/lib")))))))))))
(inputs (list igraph))
(propagated-inputs (list python-texttable))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://igraph.org/python/")
(synopsis "Python bindings for the igraph network analysis library"))))
@@ -353,11 +353,12 @@ (define-public python-vtraag-louvain
(("self.use_pkgconfig = False")
"self.use_pkgconfig = True")))))))
(inputs (list igraph))
- (propagated-inputs (list python-igraph))
+ (propagated-inputs (list python-igraph python-setuptools))
(native-inputs
(list pkg-config
python-ddt
- python-setuptools-scm))
+ python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/vtraag/louvain")
(synopsis "Community detection in large networks")
(description
@@ -156,7 +156,9 @@ (define-public python-graphviz
python-mock
python-pytest
python-pytest-cov
- python-pytest-mock))
+ python-pytest-mock
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/xflr6/graphviz")
(synopsis "Simple Python interface for Graphviz")
(description
@@ -179,13 +179,14 @@ (define-public reuse
(base32 "0ij2mpdnawjabnsy291157wzci9050dfclwib95phg7pnmd6xsw0"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-poetry-core python-pytest))
+ (list python-poetry-core python-pytest python-wheel))
(inputs
(list python-binaryornot
python-boolean.py
python-debian
python-jinja2
- python-license-expression))
+ python-license-expression
+ python-setuptools)) ; For pkg_resources.
(home-page "https://reuse.software/")
(synopsis "Provide and verify copyright and licensing information")
(description
@@ -745,7 +745,7 @@ (define-public python-sacrebleu
python-portalocker
python-regex
python-tabulate))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mjpost/sacrebleu")
(synopsis
"Compute shareable, comparable, and reproducible BLEU, chrF, and TER scores")
@@ -786,7 +786,7 @@ (define-public python-spacy-legacy
(build-system pyproject-build-system)
;; This package depends on spacy, which depends on this package.
(arguments (list #:tests? #false))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://spacy.io")
(synopsis "Legacy registered functions for spaCy backwards compatibility")
(description
@@ -807,7 +807,7 @@ (define-public python-spacy-loggers
(build-system pyproject-build-system)
;; This package depends on spacy, which depends on this package.
(arguments (list #:tests? #false))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/explosion/spacy-loggers")
(synopsis "Logging utilities for SpaCy")
(description "This package provides logging utilities for the SpaCy
@@ -1548,7 +1548,7 @@ (define-public python-tslearn
python-scikit-learn
tensorflow
python-wheel))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tslearn-team/tslearn")
(synopsis "Machine learning toolkit for time series data")
(description "This is a Python library for time series data mining.
@@ -1594,7 +1594,9 @@ (define-public python-imbalanced-learn
python-mypy
python-pandas
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/scikit-learn-contrib/imbalanced-learn")
(synopsis "Toolbox for imbalanced dataset in machine learning")
(description "This is a Python package offering a number of re-sampling
@@ -1737,7 +1739,9 @@ (define-public python-cleanlab
(native-inputs
(list python-pytest
python-pytorch
- python-torchvision))
+ python-torchvision
+ python-setuptools
+ python-wheel))
(home-page "https://cleanlab.ai")
(synopsis "Automatically find and fix dataset issues")
(description
@@ -1769,7 +1773,7 @@ (define-public python-cleanlab-1
python-scipy
python-tqdm))
(native-inputs
- (list python-pytest))))
+ (list python-pytest python-setuptools python-wheel))))
(define-public python-cma
(package
@@ -1810,7 +1814,7 @@ (define-public python-cmaes
(base32 "1f3143w8ii6i93bdh65iazrq1lryccd805ndnqww5l8h7qnnzpkm"))
(file-name (git-file-name name version))))
(build-system pyproject-build-system)
- (native-inputs (list python-hypothesis))
+ (native-inputs (list python-hypothesis python-setuptools python-wheel))
(propagated-inputs (list python-numpy))
(home-page "https://github.com/CyberAgentAILab/cmaes")
(synopsis "CMA-ES implementation for Python")
@@ -1981,13 +1985,15 @@ (define-public python-hyperopt
python-networkx
python-numpy
python-scipy
+ python-setuptools ; For pkg_resources.
python-six
python-tqdm))
(native-inputs
(list python-black
python-nose
python-pymongo
- python-pytest))
+ python-pytest
+ python-wheel))
(home-page "https://hyperopt.github.io/hyperopt/")
(synopsis "Library for hyperparameter optimization")
(description "Hyperopt is a Python library for serial and parallel
@@ -3537,7 +3543,8 @@ (define-public python-tensorly
;; nor is examples/plot_quantum.py
" and not test_file_is_generated"))))
(propagated-inputs (list python-jsmin python-numpy python-scipy))
- (native-inputs (list python-pytest python-pytest-cov python-sphinx))
+ (native-inputs (list python-pytest python-pytest-cov python-sphinx
+ python-setuptools python-wheel))
(home-page "https://github.com/tensorly/tensorly")
(synopsis "Tensor learning in Python")
(description
@@ -3966,6 +3973,7 @@ (define-public python-readchar
(lambda _
(delete-file "readchar/_win_read.py"))))))
(propagated-inputs (list python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/magmax/python-readchar")
(synopsis "Library to easily read single chars and key strokes")
(description "This package provides a Python library to easily read single
@@ -4199,7 +4207,7 @@ (define-public python-torchvision
python-pillow-simd
python-pytorch))
(native-inputs
- (list which python-pytest))
+ (list which python-pytest python-setuptools python-wheel))
(home-page "https://pytorch.org/vision/stable/index.html")
(synopsis "Datasets, transforms and models specific to computer vision")
(description
@@ -4747,7 +4755,7 @@ (define-public python-brian2
;; Required by codegen.
python-setuptools
python-sympy))
- (native-inputs (list python-pytest python-pytest-xdist))
+ (native-inputs (list python-pytest python-pytest-xdist python-wheel))
(home-page "https://briansimulator.org/")
(synopsis "Clock-driven simulator for spiking neural networks")
(description
@@ -161,6 +161,7 @@ (define-module (gnu packages maths)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pulseaudio)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
@@ -4823,7 +4824,8 @@ (define-public python-blis
(invoke "python" "setup.py" "build_ext" "--inplace"
"-j" (number->string (parallel-job-count))))))))
(propagated-inputs (list python-numpy))
- (native-inputs (list python-cython python-pytest))
+ (native-inputs (list python-cython python-pytest
+ python-setuptools python-wheel))
(home-page "https://github.com/explosion/cython-blis")
(synopsis "Blis as a self-contained C-extension for Python")
(description
@@ -326,7 +326,7 @@ (define-public zabbix-cli
(string-append #$output "/share/doc/"
#$name "/html")))))))
(native-inputs
- (list python-pytest python-sphinx))
+ (list python-pytest python-sphinx python-setuptools python-wheel))
(inputs
(list ncurses python-requests))
(home-page "https://github.com/unioslo/zabbix-cli")
@@ -963,7 +963,8 @@ (define-public python-anaconda-client
(add-before 'check 'set-HOME
(lambda _ (setenv "HOME" "/tmp"))))))
(propagated-inputs
- (list python-clyent python-nbformat python-pyyaml python-requests))
+ (list python-clyent python-nbformat python-pyyaml python-requests
+ python-setuptools))
(native-inputs
(list python-coverage
python-dateutil
@@ -971,7 +972,8 @@ (define-public python-anaconda-client
python-mock
python-pillow
python-pytest
- python-pytz))
+ python-pytz
+ python-wheel))
(home-page "https://github.com/Anaconda-Platform/anaconda-client")
(synopsis "Anaconda Cloud command line client library")
(description
@@ -341,7 +341,8 @@ (define-public python-clorm
(("self\\.assertTrue\\(os_called\\)" all)
(string-append "# " all))))))))
(propagated-inputs (list python-clingo))
- (native-inputs (list python-typing-extensions))
+ (native-inputs (list python-typing-extensions
+ python-setuptools python-wheel))
(home-page "https://potassco.org")
(synopsis "Object relational mapping to clingo")
(description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM,
@@ -366,6 +367,7 @@ (define-public python-telingo
"0g3khxfdzc2hc7dkiyyqhb399h6h21m5wkp6wy8w71n0m32fiy53"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-clingo))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://potassco.org/")
(synopsis "Solve dynamic temporal logic programs")
(description "This package provides a system to solve dynamic temporal
@@ -393,8 +395,10 @@ (define-public python-clingraph
python-imageio
python-jinja2
python-jsonschema
- python-networkx))
- (native-inputs (list dot2tex graphviz python-pylint python-pytest))
+ python-networkx
+ python-setuptools))
+ (native-inputs (list dot2tex graphviz python-pylint python-pytest
+ python-wheel))
(home-page "https://github.com/potassco/clingraph")
(synopsis "Visualizer for graphs defined as logic programs")
(description
@@ -381,7 +381,9 @@ (define-public python-mypy-protobuf
(list python-grpc-stubs
python-grpcio-tools
python-pytest
- python-typing-extensions))
+ python-typing-extensions
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list protobuf
python-protobuf
@@ -206,7 +206,7 @@ (define-public python-trove-classifiers
(build-system pyproject-build-system)
(arguments (list #:build-backend "setuptools.build_meta"
#:tests? #f)) ;keep dependencies to a minimum
- (native-inputs (list python-wheel))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/pypa/trove-classifiers")
(synopsis "Canonical source for classifiers on PyPI")
(description "This package is the canonical source for classifiers use on
@@ -588,6 +588,7 @@ (define-public python-flit-scm
;; builder instead.
#:build-backend "setuptools.build_meta"))
(propagated-inputs (list python-flit-core python-setuptools-scm python-tomli))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://gitlab.com/WillDaSilva/flit_scm")
(synopsis "PEP 518 build backend combining flit_core and setuptools_scm")
(description "This package provides a PEP 518 build backend that uses
@@ -586,7 +586,9 @@ (define-public python-pytest-doctestplus
" and not test_remote_data_requires"
" and not test_remote_data_ignore_warnings"))))
(native-inputs
- (list python-numpy python-pytest python-setuptools-scm))
+ (list python-numpy python-pytest python-setuptools python-setuptools-scm
+ python-wheel))
+ (propagated-inputs (list python-setuptools)) ;; for pkg_resources
(home-page "https://github.com/astropy/pytest-doctestplus")
(synopsis "Pytest plugin with advanced doctest features")
(description
@@ -636,7 +638,9 @@ (define-public python-pytest-filter-subpackage
(list python-pytest
python-pytest-cov
python-pytest-doctestplus
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/astropy/pytest-filter-subpackage")
(synopsis "Pytest plugin for filtering based on sub-packages")
(description
@@ -749,7 +753,8 @@ (define-public python-pytest-remotedata
"not test_default_behavior"
" and not test_strict_with_decorator"))))
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest python-setuptools python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-packaging))
(home-page "https://github.com/astropy/pytest-remotedata")
@@ -843,7 +848,9 @@ (define-public python-pytest-mpl
(list
#:test-flags #~(list "-m" "mpl_image_compare")))
(native-inputs
- (list python-pytest))
+ (list python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-jinja2
python-matplotlib
@@ -1770,7 +1777,8 @@ (define-public python-memory-profiler
(("def test_memory_profiler")
"def __off_test_memory_profiler")))))))
(native-inputs
- (list python-pytest python-pytest-fixture-config python-safety))
+ (list python-pytest python-pytest-fixture-config python-safety
+ python-setuptools python-wheel))
(propagated-inputs (list python-psutil))
(home-page "https://github.com/pythonprofilers/memory_profiler")
(synopsis "Memory profiler for Python")
@@ -2178,7 +2186,7 @@ (define-public python-aioresponses
(native-inputs
(list python-pbr python-ddt python-pytest))
(propagated-inputs
- (list python-aiohttp))
+ (list python-aiohttp python-setuptools))
(home-page "https://github.com/pnuckowski/aioresponses")
(synopsis "Mock out requests made by ClientSession from aiohttp package")
(description
@@ -2390,7 +2398,9 @@ (define-public python-nox
(native-inputs
(list python-jinja2
python-pytest
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://nox.thea.codes/")
(synopsis "Flexible test automation")
(description
@@ -2544,7 +2554,8 @@ (define-public python-pytest-httpx
(base32 "1ncpd74hmsz4sadvjg99fnfscxpgh3mc2siini0dhxzwgwdkk5i7"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-httpx))
- (native-inputs (list python-pytest python-pytest-asyncio))
+ (native-inputs (list python-pytest python-pytest-asyncio python-setuptools
+ python-wheel))
(home-page "https://colin-b.github.io/pytest_httpx/")
(synopsis "Pytest plugin to mock httpx")
(description "This package provides a pytest fixture to mock httpx
@@ -2621,7 +2632,8 @@ (define-public python-vulture
;; skip test that uses python-pint
;; pint has many dependencies
"not test_whitelists_with_python")))))))
- (native-inputs (list python-pytest python-pytest-cov))
+ (native-inputs (list python-pytest python-pytest-cov
+ python-setuptools python-wheel))
(propagated-inputs (list python-toml))
(home-page "https://github.com/jendrikseipp/vulture")
(synopsis "Find dead Python code")
@@ -64,7 +64,9 @@ (define-public python-multivolumefile
python-hypothesis
python-pyannotate
python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/miurahr/multivolume")
(synopsis "Treat multiple files as one")
(description "MultiVolumefile is a Python library that provides a
@@ -89,7 +91,9 @@ (define-public python-pybcj
python-hypothesis
python-pytest
python-pytest-cov
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://codeberg.org/miurahr/pybcj")
(synopsis "BCJ filter library")
(description "In data compression, BCJ, short for Branch-Call-Jump, refers
@@ -149,6 +153,7 @@ (define-public python-brotlicffi
(setenv "USE_SHARED_BROTLI" "1"))))))
(propagated-inputs (list python-cffi))
(inputs (list brotli))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python-hyper/brotlicffi")
(synopsis "Python CFFI bindings to the Brotli library")
(description "This package provides Python CFFI bindings to the Brotli
@@ -170,7 +175,9 @@ (define-public python-inflate64
(native-inputs
(list python-pyannotate
python-pytest
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://pypi.org/project/inflate64/")
(synopsis "deflate64 compression/decompression library")
(description "The @code{inflate64} package provides @code{Deflater} and
@@ -199,7 +206,7 @@ (define-public python-isal
(add-after 'unpack 'use-dynamic-linking
(lambda _ (setenv "PYTHON_ISAL_LINK_DYNAMIC" "1"))))))
(inputs (list isa-l))
- (native-inputs (list python-cython))
+ (native-inputs (list python-cython python-setuptools python-wheel))
(home-page "https://github.com/pycompression/python-isal")
(synopsis "Python bindings for the ISA-L compression library")
(description
@@ -225,7 +232,9 @@ (define-public python-pyppmd
python-pytest-benchmark
python-pytest-cov
python-pytest-timeout
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/miurahr/pyppmd")
(synopsis "PPMd compression/decompression library")
(description "Pyppmd provides classes and functions for compressing and
@@ -287,6 +296,7 @@ (define-public python-py7zr
python-texttable))
(native-inputs
(list python-setuptools
+ python-wheel
python-setuptools-scm
python-coverage
python-coveralls
@@ -298,7 +298,9 @@ (define-public python-keyring
(native-inputs
(list python-toml
python-pytest
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-importlib-metadata
python-jaraco-classes
@@ -530,7 +532,9 @@ (define-public python-cryptography
python-pretend
python-pytest ;for subtests
python-pytest-benchmark
- python-pytest-subtests))
+ python-pytest-subtests
+ python-setuptools
+ python-wheel))
(inputs (list python-cryptography-rust))
(propagated-inputs (list python-cffi))
(home-page "https://github.com/pyca/cryptography")
@@ -1038,7 +1042,7 @@ (define-public python-m2crypto
;; certificates.
#:tests? #f))
(inputs (list openssl))
- (native-inputs (list swig))
+ (native-inputs (list swig python-setuptools python-wheel))
(home-page "https://gitlab.com/m2crypto/m2crypto")
(synopsis "Python crypto and TLS toolkit")
(description "@code{M2Crypto} is a complete Python wrapper for OpenSSL
@@ -1218,7 +1222,8 @@ (define-public python-service-identity
(base32
"0d4x84crbz0a17d8gi90z6zlxwm9pslc65rx0cdw2797ra360v3f"))))
(build-system pyproject-build-system)
- (native-inputs (list python-idna python-pytest))
+ (native-inputs (list python-idna python-pytest python-setuptools
+ python-wheel))
(propagated-inputs (list python-attrs python-cryptography python-pyasn1
python-pyasn1-modules python-six))
(home-page "https://service-identity.readthedocs.io/")
@@ -1449,6 +1454,8 @@ (define-public python-trustme
python-pytest
python-pytest-cov
python-service-identity
+ python-setuptools
+ python-wheel
python-zipp))
(propagated-inputs
(list python-cryptography
@@ -191,9 +191,12 @@ (define-public python-scikit-allel
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(propagated-inputs
(list python-dask
- python-numpy))
+ python-numpy
+ python-click))
(native-inputs
(list python-cython
+ python-setuptools
+ python-wheel
;; The following are all needed for the tests
htslib
python-h5py
@@ -340,7 +343,7 @@ (define-public python-scikit-optimize
python-scikit-learn
python-scipy))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://scikit-optimize.github.io/")
(synopsis "Sequential model-based optimization toolbox")
(description "Scikit-Optimize, or @code{skopt}, is a simple and efficient
@@ -743,7 +746,7 @@ (define-public python-xarray
"1339fz5gxkizq02h6vn19546x9p4c3nd9ipzpcg39h7gwhg26yi6"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm python-pytest))
+ (list python-setuptools python-setuptools-scm python-pytest python-wheel))
(propagated-inputs
(list python-numpy python-pandas))
(home-page "https://github.com/pydata/xarray")
@@ -840,7 +843,8 @@ (define-public python-pytensor
"--ignore" "tests/tensor/"
"--ignore" "tests/sandbox/"
"--ignore" "tests/sparse/sandbox/")))))))
- (native-inputs (list python-cython python-pytest python-versioneer))
+ (native-inputs (list python-cython python-pytest python-versioneer
+ python-setuptools python-wheel))
(propagated-inputs (list python-cons
python-etuples
python-filelock
@@ -1585,7 +1589,9 @@ (define-public python-plotnine
python-mock
python-pandas
python-pytest python-pytest-cov
- tzdata-for-tests))
+ tzdata-for-tests
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/has2k1/plotnine")
(synopsis "Grammar of Graphics for Python")
(description
@@ -2035,7 +2041,8 @@ (define-public python-libneuroml
"0mrm4rd6x1sm6hkvhk20mkqp9q53sl3lbvq6hqzyymkw1iqq6bhy"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-lxml python-six))
- (native-inputs (list python-pytest python-numpy python-tables))
+ (native-inputs (list python-pytest python-numpy python-tables
+ python-setuptools python-wheel))
(home-page "https://libneuroml.readthedocs.org/en/latest/")
(synopsis
"Python library for working with NeuroML descriptions of neuronal models")
@@ -304,7 +304,8 @@ (define-public python-aiosignal
(build-system pyproject-build-system)
(arguments (list #:test-flags #~(list "tests")))
(propagated-inputs (list python-frozenlist))
- (native-inputs (list python-pytest python-pytest-asyncio python-pytest-cov))
+ (native-inputs (list python-pytest python-pytest-asyncio python-pytest-cov
+ python-setuptools python-wheel))
(home-page "https://github.com/aio-libs/aiosignal")
(synopsis "Callback manager for Python @code{asyncio} projects")
(description "This Python module provides @code{Signal}, an abstraction to
@@ -601,7 +602,9 @@ (define-public python-asgi-csrf
python-httpx
python-pytest
python-pytest-asyncio
- python-starlette))
+ python-starlette
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/simonw/asgi-csrf")
(synopsis "ASGI middleware for protecting against CSRF attacks")
(description "This Asynchronous Server Gateway Interface (ASGI)
@@ -642,7 +645,9 @@ (define-public python-asgi-lifespan
(native-inputs (list python-pytest
python-pytest-asyncio
python-pytest-trio
- python-starlette))
+ python-starlette
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-sniffio))
(home-page "https://github.com/florimondmanca/asgi-lifespan")
(synopsis "Programmatic startup/shutdown of ASGI apps")
@@ -764,7 +769,9 @@ (define-public python-aws-xray-sdk
python-pytest-benchmark
python-requests
python-sqlalchemy
- python-webtest))
+ python-webtest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-aiohttp
python-botocore
@@ -1101,7 +1108,9 @@ (define-public python-httplib2
python-pytest-randomly
python-pytest-timeout
python-pytest-xdist
- python-six))
+ python-six
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/httplib2/httplib2")
(synopsis "Comprehensive HTTP client library")
(description
@@ -1419,7 +1428,7 @@ (define-public python-h11
(base32 "17b97c56y31hi0n0x0cb5a87x4xr9jijf2y06pzj0977k6zgn6cg"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/python-hyper/h11")
(synopsis "Pure-Python, bring-your-own-I/O implementation of HTTP/1.1")
(description
@@ -1825,7 +1834,9 @@ (define-public python-omnipath
python-pytest-mock
python-requests-mock
python-setuptools-scm
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://omnipathdb.org/")
(synopsis "Python client for the OmniPath web service")
(description "This package provides a Python client for the OmniPath web
@@ -1855,7 +1866,7 @@ (define-public python-openai
(propagated-inputs (list python-aiohttp python-requests python-tqdm
python-typing-extensions))
(native-inputs (list python-black python-pytest python-pytest-asyncio
- python-pytest-mock))
+ python-pytest-mock python-setuptools python-wheel))
(home-page "https://github.com/openai/openai-python")
(synopsis "Python client library for the OpenAI API")
(description "This package provides a Python client library for the
@@ -2060,7 +2071,7 @@ (define-public python-cssutils
"and not encutils "
"and not website.logging")))))))
(native-inputs
- (list python-pytest python-jaraco-test))
+ (list python-pytest python-jaraco-test python-setuptools python-wheel))
(home-page "https://github.com/jaraco/cssutils")
(synopsis
"CSS Cascading Style Sheets library for Python")
@@ -2243,7 +2254,7 @@ (define-public python-wsproto
(base32 "0rahm1j9danv1l6i6as80acwv16ycihxkhrvwjiqh9drxhk5ymmd"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-h11))
(home-page "https://github.com/python-hyper/wsproto/")
@@ -3728,7 +3739,7 @@ (define-public python-flask-compress
"178jzz6jxlxllcjqamzh5q7ahfh90m5cl1il9vmjs3xhz65z35pf"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-brotli python-flask))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools-scm python-setuptools python-wheel))
(home-page "https://github.com/colour-science/flask-compress")
(synopsis "Compress responses in a Flask app")
(description
@@ -3751,6 +3762,7 @@ (define-public python-flask-seasurf
(arguments
(list #:tests? #false)) ;there are none
(propagated-inputs (list python-flask))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/maxcountryman/flask-seasurf/")
(synopsis "CSRF extension for Flask")
(description "SeaSurf is a Flask extension for preventing cross-site
@@ -4182,7 +4194,7 @@ (define-public python-flask-jwt
"flask_jwt/__init__.py")
(("access_token.decode\\('utf-8'\\)") "access_token")))))))
(propagated-inputs (list python-flask python-pyjwt))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mattupstate/flask-jwt")
(synopsis "JWT token authentication for Flask apps")
(description "This package implements JWT token authentication for Flask
@@ -4209,7 +4221,9 @@ (define-public python-flask-restful
(native-inputs
(list python-blinker
python-mock
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://www.github.com/flask-restful/flask-restful/")
(synopsis "Flask module for creating REST APIs")
(description
@@ -4870,9 +4884,9 @@ (define-public python-paste
(delete-file "tests/test_proxy.py") #t))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-nose))
+ (list python-pytest python-wheel))
(propagated-inputs
- (list python-six))
+ (list python-six python-setuptools))
(home-page "https://pythonpaste.readthedocs.io/")
(synopsis
"Python web development tools, focusing on WSGI")
@@ -5148,6 +5162,7 @@ (define-public whoogle-search
python-wcwidth
python-werkzeug
python-dotenv))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/benbusby/whoogle-search")
(synopsis "Self-hosted, ad-free, privacy-respecting metasearch engine")
(description
@@ -5989,7 +6004,9 @@ (define-public python-httpcore
python-pytest-httpbin
python-pytest-trio
python-uvicorn
- python-trustme))
+ python-setuptools
+ python-trustme
+ python-wheel))
(propagated-inputs
(list python-anyio
python-certifi
@@ -6023,7 +6040,7 @@ (define-public python-httpcore-bootstrap
(package/inherit python-httpcore
(name "python-httpcore-bootstrap")
(arguments (list #:tests? #f))
- (native-inputs '()))))
+ (native-inputs (list python-setuptools python-wheel)))))
(define-public python-httpx
(package
@@ -6067,7 +6084,9 @@ (define-public python-httpx
python-trio
python-trio-typing
python-trustme
- python-uvicorn))
+ python-uvicorn
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-charset-normalizer
python-brotli
@@ -6299,7 +6318,7 @@ (define-public python-rapidjson
"/include/rapidjson" "'"))
(("if not os.path.isdir.*") "if False:")))))))
(native-inputs
- (list rapidjson python-pytest python-pytz))
+ (list rapidjson python-pytest python-pytz python-setuptools python-wheel))
(home-page "https://github.com/python-rapidjson/python-rapidjson")
(synopsis "Python wrapper around rapidjson")
(description "This package provides a python wrapper around rapidjson.")
@@ -307,7 +307,8 @@ (define-public python-janus
(base32 "04hnrdcf03g1s0x3sr72sh9gnszz6kyfsl9dg8a4n0zvvhn6z5yz"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-pytest-cov python-pytest-asyncio))
+ (list python-pytest python-pytest-cov python-pytest-asyncio
+ python-setuptools python-wheel))
(propagated-inputs (list python-typing-extensions))
(home-page "https://github.com/aio-libs/janus/")
(synopsis
@@ -579,6 +580,7 @@ (define-public python-fit-nbinom
"12v8l5i35vjbpvh5i4lw29ys6vpr3z7pysyrx33hxaq09zr015mx"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-scipy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/joachimwolff/fit_nbinom")
(synopsis "Negative binomial maximum likelihood estimator")
(description "This package provides an implementation in Python using
@@ -597,7 +599,8 @@ (define-public python-docrep
"0523jrzjj29kxpdllmfhrfj9kysi9mphp2m7ippjkn5b07i1g2pd"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-six))
- (native-inputs (list python-pytest python-pytest-runner))
+ (native-inputs (list python-pytest python-pytest-runner
+ python-setuptools python-wheel))
(home-page "https://github.com/Chilipp/docrep")
(synopsis "Python package for docstring repetition")
(description "Docrep is the documentation repetition module. This module
@@ -655,6 +658,7 @@ (define-public python-adjusttext
"05zf0xn7ab40dan213fwbp1z4rybih8dphf9mzb2ddmbafxq41mv"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-matplotlib python-numpy))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/Phlya/adjustText")
(synopsis "Adjust text position in matplotlib plots to minimize overlaps")
(description
@@ -772,6 +776,7 @@ (define-public python-colored
"196ins0m7f90xz5dw764dlx060ziqbcydqzzq40b4ir5858baf3r"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;the tests are not run automatically
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://gitlab.com/dslackw/colored")
(synopsis "Simple library for color and formatting to terminal")
(description "This is a very simple Python library for color and
@@ -794,7 +799,8 @@ (define-public python-colorful
(base32 "1fcz5v8b318a3dsdha4c874jsf3wmcw3f25bv2csixclyzacli98"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-coverage python-flake8 python-pytest))
+ (list python-coverage python-flake8 python-pytest python-setuptools
+ python-wheel))
(propagated-inputs
(list python-colorama))
(home-page "http://github.com/timofurrer/colorful")
@@ -1101,7 +1107,8 @@ (define-public python-pdoc
(base32
"0gxkw607nrd67ck4w8jri9vfrm5g60qvp8b134m8zkiphbxjnx0l"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-jinja2 python-pygments))
+ (native-inputs (list python-pytest python-jinja2 python-pygments
+ python-setuptools python-wheel))
(arguments
(list
;; Some tests fail, presumably because of slight version mismatches of
@@ -1202,6 +1209,7 @@ (define-public python-plotext
"1gpy1z2i4vq1mcrhysxahz4339pbl9rzk58rf5m5gf5ym9xji6ii"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/piccolomo/plotext")
(synopsis "Plots in the terminal")
(description "Plotext lets you plot directly to the terminal.")
@@ -1331,6 +1339,8 @@ (define-public python-skranger
python-matplotlib
python-pandas
python-poetry-core
+ python-setuptools
+ python-wheel
python-pytest))
(home-page "https://github.com/crflynn/skranger")
(synopsis "Python bindings for C++ ranger random forests")
@@ -1399,7 +1409,7 @@ (define-public python-tenacity
(build-system pyproject-build-system)
(native-inputs
(list python-setuptools-scm python-tornado-6 python-typeguard
- python-pytest))
+ python-pytest python-setuptools python-wheel))
(home-page "https://github.com/jd/tenacity")
(synopsis "Retrying library for python")
(description "Tenacity is a general-purpose python library to simplify the
@@ -1527,7 +1537,7 @@ (define-public python-glymur
;; which is patched above.
(delete-file "tests/test_config.py"))))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(inputs
(list openjpeg ; glymur/lib/openjp2.py
libtiff)) ; glymur/lib/tiff.py
@@ -1796,7 +1806,7 @@ (define-public python-rasterio
python-click-plugins
python-cligj
python-numpy
- python-setuptools
+ python-setuptools ; For pkg_resources.
python-snuggs))
(native-inputs (list gdal
python-boto3
@@ -1805,7 +1815,8 @@ (define-public python-rasterio
python-packaging
python-pytest
python-pytest-cov
- python-shapely))
+ python-shapely
+ python-wheel))
(home-page "https://github.com/rasterio/rasterio")
(synopsis "Fast and direct raster I/O for use with Numpy and SciPy")
(description "This package implements fast and direct raster I/O for use
@@ -1833,7 +1844,7 @@ (define-public python-shapely
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
(native-inputs
(list python-cython python-matplotlib python-pytest
- python-pytest-cov))
+ python-pytest-cov python-setuptools python-wheel))
(inputs
(list geos))
(propagated-inputs
@@ -2119,7 +2130,9 @@ (define-public python-h5netcdf
(native-inputs
(list python-netcdf4
python-pytest
- python-setuptools-scm))
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-h5py python-packaging))
(home-page "https://h5netcdf.org")
@@ -2414,7 +2427,7 @@ (define-public python-license-expression
(base32 "0lvshl2fhwa568d3y3vmx45hdp8gk5w9yl3b2q5d66r5vqn1sfwl"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-scm python-pytest))
+ (list python-setuptools-scm python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-boolean.py))
(home-page "https://github.com/nexB/license-expression")
@@ -2537,7 +2550,8 @@ (define-public python-filelock-3.5
(base32
"058av1r760ws7z6qffsjpqa39fmdxw0s1wnyr7p50y3zclg6cyqk"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest python-setuptools-scm))
+ (native-inputs (list python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/tox-dev/py-filelock")
(synopsis "Platform independent file lock")
(description "@code{filelock} contains a single module implementing
@@ -2798,7 +2812,8 @@ (define-public python-can
;; These tests fail with "OSError: [Errno 19] No such device".
"-k" "not BasicTestUdpMulticastBusIPv")))
(propagated-inputs
- (list python-msgpack python-typing-extensions python-wrapt))
+ (list python-msgpack python-typing-extensions python-wrapt
+ python-setuptools))
(native-inputs
(list ;; python-canalystii ; Not packed yet
python-codecov
@@ -2811,7 +2826,8 @@ (define-public python-can
python-pytest
python-pytest-cov
python-pytest-runner
- python-pytest-timeout))
+ python-pytest-timeout
+ python-wheel))
(home-page "https://github.com/hardbyte/python-can")
(synopsis "Controller Area Network (CAN) interface module for Python")
(description "This package defines the @code{can} module, which provides
@@ -2912,6 +2928,7 @@ (define-public python-optparse-pretty
(base32 "1920wbh2b7a8qn7zx2iiqbcdaax335l81a73x9pp8h11yzs2jdmh"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;There are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/gvalkov/optparse-pretty")
(synopsis "Compact help formatter for optparse")
(description
@@ -3156,6 +3173,7 @@ (define-public python-fastprogress
;; XXX: Fails with: "In procedure utime: No such file
;; or directory".
(delete 'ensure-no-mtimes-pre-1980))))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/fastai/fastprogress")
(synopsis "Progress bar for Jupyter Notebook and console")
(description
@@ -3389,6 +3407,8 @@ (define-public python-omero-py
python-pytest
python-pytest-rerunfailures
python-pytest-xdist
+ python-setuptools
+ python-wheel
unzip
(origin
(method url-fetch)
@@ -3679,7 +3699,9 @@ (define-public python-jsonargparse
python-pytest-subtests
python-responses
python-tox
- python-types-requests))
+ python-types-requests
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/omni-us/jsonargparse/")
(synopsis "Implement minimal boilerplate CLIs derived from type hints")
(description
@@ -3884,7 +3906,7 @@ (define-public python-palettable
(base32
"1a4h0jpsr3wjciqg9a5kslxv65d3qqgmqgkpai4cl77wlpcxfk89"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://jiffyclub.github.io/palettable/")
(synopsis "Color palettes for Python")
(description "Palettable (formerly brewer2mpl) is a library of color
@@ -3965,7 +3987,8 @@ (define-public python-parsley
(string-append "not test_sending_empty_netstring"
" and not test_sending_one_netstring"
" and not test_sending_two_netstrings"))))
- (native-inputs (list python-pytest python-twisted))
+ (native-inputs (list python-pytest python-twisted python-setuptools
+ python-wheel))
(home-page "https://launchpad.net/parsley")
(synopsis "Parsing and pattern matching Python library")
(description
@@ -4069,7 +4092,9 @@ (define-public python-portalocker
python-pytest-cov
python-pytest-mypy
python-pytest-timeout
- python-redis))
+ python-redis
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/WoLpH/portalocker")
(synopsis "Python library for file locking")
(description "Portalocker is a library to provide an easy API to file
@@ -4159,7 +4184,9 @@ (define-public python-extension-helpers
python-pytest
python-pytest-astropy
python-pytest-cov
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://extension-helpers.readthedocs.io")
(synopsis "Astropy ecosystem utilities for building and installing packages")
(description
@@ -4633,12 +4660,14 @@ (define-public python-clickhouse-connect
python-orjson
python-pandas
python-pytz
+ python-setuptools ; For pkg_resources.
python-sqlalchemy
python-urllib3
python-zstandard))
(native-inputs
(list python-cython
- python-pytest))
+ python-pytest
+ python-wheel))
(home-page "https://github.com/ClickHouse/clickhouse-connect")
(synopsis
"ClickHouse database core driver for Python, Pandas, and Superset")
@@ -4683,7 +4712,7 @@ (define-public python-cloup
"05c6cjpnf9s72gyn5dckxbmd8rf2kgdzfsl7pqzrnc1lcdl13zmv"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-click))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/janLuke/cloup")
(synopsis "Extension library for python-click")
(description
@@ -4787,7 +4816,8 @@ (define-public python-jsonschema
(when tests?
(setenv "JSON_SCHEMA_TEST_SUITE" "json")
(invoke "trial" "jsonschema")))))))
- (native-inputs (list python-setuptools-scm python-twisted))
+ (native-inputs (list python-setuptools-scm python-twisted
+ python-setuptools python-wheel))
(propagated-inputs
(list python-attrs
python-importlib-metadata
@@ -4990,7 +5020,9 @@ (define-public python-pyjwt
python-cryptography
python-pytest
python-sphinx
- python-sphinx-rtd-theme))
+ python-sphinx-rtd-theme
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/progrium/pyjwt")
(synopsis "JSON Web Token implementation in Python")
(description
@@ -5237,7 +5269,7 @@ (define-public python-uc-micro-py
(base32
"17f55gi55rg47nm88fn3f8851ph03dgykdp011lxr3j6hk18lyfv"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tsutsu3/uc.micro-py")
(synopsis "Unicode data files for linkify-it-py projects")
(description "This package contains a micro subset of Unicode data files
@@ -5259,7 +5291,7 @@ (define-public python-linkify-it-py
"0fg0a1lc8xbb62y9krxcp708ll58dxcwm8i7rrwpkd5sh2229f6x"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-uc-micro-py))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/tsutsu3/linkify-it-py")
(synopsis "Links recognition library with full Unicode support")
(description "This is Python port of
@@ -5284,7 +5316,7 @@ (define-public python-makefun
"19a8dga8rnmjn5gy1cy1wdi28swbkdkypwbqikbxil6ynqcg3c20"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-setuptools-scm))
+ (list python-pytest python-setuptools python-setuptools-scm python-wheel))
(home-page "https://github.com/smarie/python-makefun")
(synopsis "Library to dynamically create python functions")
(description "@code{makefun} helps create functions dynamically with a
@@ -5867,7 +5899,9 @@ (define-public python-docx
python-flake8
python-mock
python-pyparsing
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-lxml))
(home-page "https://github.com/python-openxml/python-docx/")
@@ -6025,6 +6059,7 @@ (define-public python-pygtrie
(base32
"1qm4xdmzd4q5pc9h5gjdpr5m7lg06k8dvqnjn7d07d3fhani8d90"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/mina86/pygtrie")
(synopsis "Pure Python trie data structure implementation")
(description
@@ -7447,7 +7482,7 @@ (define-public python-pygit2
(base32 "1v34xdvh6i5cn5srwicvp0i2kvv8fzsv0v9p72ng081nsczmhgvr"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-cffi libgit2))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/libgit2/pygit2")
(synopsis "Python bindings for libgit2")
(description "Pygit2 is a set of Python bindings to the libgit2 shared library.")
@@ -7685,7 +7720,9 @@ (define-public python-norns
(base32
"1r1lcq59v6l75wkbp7mypanr69a6fv6m58v6dw3v6b4vwz5nqg0z"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-appdirs python-nose python-pyyaml))
+ (propagated-inputs (list python-appdirs python-nose python-pyyaml
+ python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/simonvh/norns")
(synopsis "Simple YAML-based config module")
(description "This package provides a simple YAML-based config module.")
@@ -9006,9 +9043,10 @@ (define-public python-imageio
(delete-file "tests/test_freeimage.py"))))))
(inputs (list freeimage))
(propagated-inputs
- (list python-imageio-ffmpeg python-numpy python-pillow python-psutil))
+ (list python-imageio-ffmpeg python-numpy python-pillow python-psutil
+ python-setuptools))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-wheel))
(home-page "https://imageio.github.io/")
(synopsis "Library for reading and writing a wide range of image data")
(description
@@ -10083,7 +10121,9 @@ (define-public python-jaraco-test
python-pytest-cov
python-pytest-enabler
python-pytest-flake8
- python-pytest-mypy))
+ python-pytest-mypy
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/jaraco.test")
(synopsis "Testing support by jaraco")
(description "This package provides testing support by jaraco.")
@@ -10441,6 +10481,7 @@ (define-public python-jupyter-client-bootstrap
python-pyzmq
python-tornado-6
python-traitlets))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://jupyter.org/")
(synopsis "Jupyter protocol implementation and client libraries")
(description
@@ -10478,7 +10519,9 @@ (define-public python-jupyter-client
python-pytest-timeout
python-async-generator
python-ipython
- python-ipykernel-bootstrap))
+ python-ipykernel-bootstrap
+ python-setuptools
+ python-wheel))
(properties (alist-delete 'hidden? (package-properties base))))))
(define-public python-ipykernel
@@ -10559,6 +10602,8 @@ (define-public python-ipykernel
;; avoids that.
python-pytest-bootstrap
python-pytest-timeout
+ python-setuptools
+ python-wheel
tini))
(home-page "https://ipython.org")
(synopsis "IPython Kernel for Jupyter")
@@ -10578,7 +10623,7 @@ (define-public python-ipykernel-bootstrap
;; left out here to break the cycle.
#:phases #~(modify-phases %standard-phases
(delete 'sanity-check))))
- (native-inputs '())
+ (native-inputs (list python-setuptools python-wheel))
(propagated-inputs
(modify-inputs (package-propagated-inputs parent)
(replace "python-jupyter-client" python-jupyter-client-bootstrap)
@@ -10648,7 +10693,9 @@ (define-public python-pubmed-parser
python-unidecode))
(native-inputs
(list python-pytest
- python-pytest-cov))
+ python-pytest-cov
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/titipata/pubmed_parser")
(synopsis "Parser for Pubmed Open-Access Subset and MEDLINE XML repository")
(description
@@ -11875,6 +11922,7 @@ (define-public python-qnorm
"{ name = \"Maarten van der Sande\", email = \"maartenvandersande@hotmail.com\"}")
(("license = \"MIT\"") "license = { file = \"LICENSE\"}")))))))
(propagated-inputs (list python-numba python-numpy python-pandas))
+ (native-inputs (list python-setuptools python-wheel python-toml))
(home-page "https://github.com/Maarten-vd-Sande/qnorm")
(synopsis "Quantile normalization")
(description "This tool implements quantile normalization. It properly
@@ -11935,7 +11983,9 @@ (define-public python-singledispatch
(build-system pyproject-build-system)
(native-inputs
(list python-pytest
- python-six)) ; required for conversion, not at run-time
+ python-setuptools
+ python-six ; required for conversion, not at run-time
+ python-wheel))
(home-page
"https://docs.python.org/3/library/functools.html#functools.singledispatch")
(synopsis "Backport of singledispatch feature from Python 3.4")
@@ -12363,7 +12413,8 @@ (define-public python-pyproject-metadata
"00zahgw9zjfqwf0218bj5k732aibnn68cq1p8f0wmbirb7fy5k31"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-packaging))
- (native-inputs (list python-pypa-build python-pytest python-tomli))
+ (native-inputs (list python-pypa-build python-pytest python-setuptools
+ python-tomli python-wheel))
(home-page "https://github.com/FFY00/python-pyproject-metadata")
(synopsis "Dataclass for PEP 621 metadata")
(description "This project does not implement the parsing of
@@ -13134,7 +13185,8 @@ (define-public python-pyftpdlib
;; Using Pytest instead of the Makefile causes the command line tests to
;; fail on unknown Pytest arguments.
(arguments (list #:test-flags #~(list "-k" "not TestCommandLineParser")))
- (native-inputs (list python-psutil python-pytest))
+ (native-inputs (list python-psutil python-pytest python-setuptools
+ python-wheel))
(propagated-inputs (list python-pyopenssl python-pysendfile))
(home-page "https://github.com/giampaolo/pyftpdlib/")
(synopsis "Asynchronous and scalable Python FTP server library")
@@ -13881,7 +13933,8 @@ (define-public python-snuggs
"0yv1wayrw9g6k0c2f721kha7wsv0s1fdlxpf5x7f34iqzq9z272h"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-numpy python-pyparsing))
- (native-inputs (list python-hypothesis python-pytest))
+ (native-inputs (list python-hypothesis python-pytest python-setuptools
+ python-wheel))
(home-page "https://github.com/mapbox/snuggs")
(synopsis "Snuggs are S-expressions for Numpy")
(description "Snuggs are S-expressions for Numpy.")
@@ -14326,7 +14379,7 @@ (define-public python-path-bootstrap
(build-system pyproject-build-system)
(arguments
(list #:tests? #f))
- (native-inputs (list python-setuptools-scm))
+ (native-inputs (list python-setuptools python-setuptools-scm python-wheel))
(home-page "https://github.com/jaraco/path")
(synopsis "Object-oriented file system path manipulation library")
(description "@code{path} (formerly @code{path.py}) implements path
@@ -14932,7 +14985,9 @@ (define-public python-fastjsonschema
python-pylint
python-pytest
python-pytest-benchmark
- python-pytest-cache))
+ python-pytest-cache
+ python-setuptools
+ python-wheel))
(home-page
"https://github.com/horejsek/python-fastjsonschema")
(synopsis
@@ -15015,7 +15070,7 @@ (define-public python-bleach
(delete-file-recursively "bleach/_vendor/html5lib")))))
(build-system pyproject-build-system)
(propagated-inputs (list python-html5lib python-tinycss2 python-webencodings))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/mozilla/bleach")
(synopsis "Whitelist-based HTML-sanitizing tool")
(description "Bleach is an easy whitelist-based HTML-sanitizing tool.")
@@ -15551,7 +15606,7 @@ (define-public python-chardet
(base32
"1r9ixxnish9j3dq4h0z0cwlkr4f5lgi6d8mhbzw59hbbjlmp2qhd"))))
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(build-system pyproject-build-system)
(arguments
(list #:test-flags
@@ -15752,7 +15807,7 @@ (define-public python-confection
(build-system pyproject-build-system)
(propagated-inputs (list python-pydantic python-srsly
python-typing-extensions))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/explosion/confection")
(synopsis "Config system for Python")
(description "Confection is a lightweight library that offers a
@@ -15816,7 +15871,8 @@ (define-public python-omegaconf
(propagated-inputs (list java-antlr4-runtime-python
python-pydevd
python-pyyaml))
- (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock))
+ (native-inputs (list icedtea antlr4 python-pytest python-pytest-mock
+ python-setuptools python-wheel))
(home-page "https://github.com/omry/omegaconf")
(synopsis "Flexible configuration system")
(description "OmegaConf is a hierarchical configuration system and
@@ -15836,7 +15892,7 @@ (define-public python-configargparse
"17vky4ihicbf7nggg30xs7h3g5rxzwgch8vilnnrvdaacszkq2qv"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-mock python-pytest))
+ (list python-mock python-pytest python-setuptools python-wheel))
(synopsis "Replacement for argparse")
(description "A drop-in replacement for argparse that allows options to also
be set via config files and/or environment variables.")
@@ -16951,6 +17007,7 @@ (define-public python-xdg
(base32
"14hwk9j5zjc8rvirw95mrb07zdnpjaxjx2mj3rnq8pnlyaa809r4"))))
(build-system pyproject-build-system)
+ (arguments (list #:tests? #f)) ; No tests in PyPi tarball.
(native-inputs
(list python-poetry-core))
(home-page "https://github.com/srstevenson/xdg-base-dirs")
@@ -17433,7 +17490,8 @@ (define-public python-cesium
python-scikit-learn
python-scipy
python-toolz))
- (native-inputs (list python-cython python-pytest python-setuptools-scm))
+ (native-inputs (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://pypi.org/project/cesium/")
(synopsis "Library for time-series feature extraction and processing")
(description
@@ -17510,7 +17568,8 @@ (define-public python-pyqtgraph
(lambda _
(setenv "QT_QPA_PLATFORM" "offscreen"))))))
(native-inputs
- (list python-pytest python-pytest-cov python-pytest-xdist))
+ (list python-pytest python-pytest-cov python-pytest-xdist
+ python-setuptools python-wheel))
(inputs
(list qtbase-5))
(propagated-inputs
@@ -17699,7 +17758,9 @@ (define-public python-codespell
python-pytest
python-pytest-cov
python-pytest-dependency
- python-tomli))
+ python-tomli
+ python-setuptools
+ python-wheel))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -18823,7 +18884,9 @@ (define-public python-inflect
python-pytest-flake8
python-pytest-mypy
;; For the version number
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/jaraco/inflect")
(synopsis "Correctly generate plurals, singular nouns, ordinals, indefinite articles")
(description
@@ -20873,7 +20936,8 @@ (define-public python-xopen
(propagated-inputs
(list pigz python-isal python-typing-extensions))
(native-inputs
- (list python-pytest python-pytest-timeout python-setuptools-scm))
+ (list python-pytest python-pytest-timeout python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/marcelm/xopen/")
(synopsis "Open compressed files transparently")
(description "This module provides an @code{xopen} function that works
@@ -20957,6 +21021,7 @@ (define-public python-chevron
"1gqfh00ics2k1sm5g46l3bi8cl5fc5d1cwzh1ylvcxvdvypklqc7"))))
(build-system pyproject-build-system)
(arguments (list #:tests? #false)) ;there are none
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/noahmorrison/chevron")
(synopsis "Mustache templating language renderer")
(description "This package provides a Python implementation of the
@@ -21009,7 +21074,9 @@ (define-public python-duckdb
python-pyarrow
python-pytest
python-pytest-runner
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://www.duckdb.org")
(synopsis "DuckDB embedded database")
(description "DuckDB is an in-process SQL OLAP database management
@@ -21868,6 +21935,7 @@ (define-public python-diff-cover
python-jinja2
python-pluggy
python-pygments
+ python-setuptools ; For pkg_resources.
python-tomli))
(native-inputs
(list python-flake8
@@ -22082,7 +22150,8 @@ (define-public python-gtts
;; Disable tests that require internet.
(list #:test-flags '(list "-k" "not net")))
(native-inputs
- (list python-pytest python-testfixtures python-click python-requests))
+ (list python-pytest python-testfixtures python-click python-requests
+ python-setuptools python-wheel))
(home-page "https://github.com/pndurette/gTTS")
(synopsis "Google Translate text-to-speech interface")
(description
@@ -22574,7 +22643,9 @@ (define-public python-marshmallow
python-mypy
python-pytest
python-pytz
- python-simplejson))
+ python-simplejson
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/marshmallow-code/marshmallow")
(synopsis "Convert complex datatypes to and from native Python datatypes")
(description "@code{marshmallow} provides a library for converting complex
@@ -22636,7 +22707,9 @@ (define-public python-apispec
python-marshmallow
python-mypy
python-pytest
- python-pyyaml))
+ python-pyyaml
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/marshmallow-code/apispec")
(synopsis "Swagger/OpenAPI specification generator")
(description "@code{python-apispec} is a pluggable API specification
@@ -22655,7 +22728,7 @@ (define-public python-apispec-webframeworks
(base32
"1wyw30402xq2a8icrsjmy9v43jyvawcjd85ccb2zicqlg4k5pcqd"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-apispec))
+ (propagated-inputs (list python-apispec python-setuptools))
(native-inputs
(list python-bottle
python-flake8
@@ -22665,7 +22738,8 @@ (define-public python-apispec-webframeworks
python-pytest
python-pyyaml
python-tornado
- python-tox))
+ python-tox
+ python-wheel))
(home-page "https://github.com/marshmallow-code/apispec-webframeworks")
(synopsis "Web framework plugins for apispec")
(description "This package provides plugins for using @code{apispec} with
@@ -23354,7 +23428,9 @@ (define-public python-tempora
python-pytest-mypy
python-setuptools-scm
python-types-freezegun
- python-types-pytz))
+ python-types-pytz
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-jaraco-functools python-pytz))
(home-page "https://github.com/jaraco/tempora")
(synopsis "Python date and time objects and routines")
@@ -23530,7 +23606,9 @@ (define-public python-zict
(list python-pytest
python-pytest-asyncio
python-pytest-repeat
- python-pytest-timeout))
+ python-pytest-timeout
+ python-setuptools
+ python-wheel))
(home-page "https://zict.readthedocs.io/en/latest/")
(synopsis "Composable mutable mapping tools")
(description "This package provides abstract @code{MutableMapping} classes
@@ -23716,7 +23794,7 @@ (define-public python-whatever
(base32 "1q7ajgqjfivxqsqgnhp4lc4p6jxyh4zprcsdbpd6dw54inaf0av5"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/Suor/whatever")
(synopsis "Make anonymous functions by partial application of operators")
(description "@code{whatever} provides an easy way to make anonymous
@@ -23738,7 +23816,7 @@ (define-public python-funcy
(file-name (git-file-name name version))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest python-whatever))
+ (list python-pytest python-whatever python-setuptools python-wheel))
(home-page "https://github.com/Suor/funcy")
(synopsis "Functional tools")
(description "@code{funcy} is a library that provides functional tools.
@@ -24126,7 +24204,7 @@ (define-public python-pybloom-live
"040i6bjqvl33j30v865shsk30s3h7f16pqwiaj5kig857dfmqm4r"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-bitarray python-xxhash))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/joseph-fox/python-bloomfilter")
(synopsis "Bloom filter")
(description "This package provides a scalable Bloom filter implemented in
@@ -25063,7 +25141,8 @@ (define-public python-numcodecs
python-msgpack
python-typing-extensions))
(native-inputs
- (list python-cython python-pytest python-setuptools-scm))
+ (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
(home-page "https://github.com/zarr-developers/numcodecs")
(synopsis "Buffer compression and transformation codecs")
(description
@@ -25169,6 +25248,7 @@ (define-public python-anndata
python-pandas
python-scipy
python-scikit-learn
+ python-setuptools ; For pkg_resources.
python-zarr))
(native-inputs
(list python-boltons
@@ -25206,7 +25286,7 @@ (define-public python-dill
(with-directory-excursion "/tmp"
(invoke "nosetests" "-v"))))))))
(native-inputs
- (list python-nose))
+ (list python-nose python-setuptools python-wheel))
(home-page "https://pypi.org/project/dill/")
(synopsis "Serialize all of Python")
(description "Dill extends Python's @code{pickle} module for serializing
@@ -25258,6 +25338,7 @@ (define-public python-multiprocess
(invoke "python" "-m" "multiprocess.tests")))))))
(propagated-inputs
(list python-dill))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://pypi.org/project/multiprocess/")
(synopsis "Multiprocessing and multithreading in Python")
(description
@@ -25619,7 +25700,8 @@ (define-public python-fsspec
(propagated-inputs
(list python-aiohttp python-libarchive-c python-requests python-tqdm))
(native-inputs
- (list python-pytest python-pytest-mock python-numpy))
+ (list python-pytest python-pytest-mock python-numpy python-setuptools
+ python-wheel))
(home-page "https://github.com/intake/filesystem_spec")
(synopsis "File-system specification")
(description "The purpose of this package is to produce a template or
@@ -25845,6 +25927,7 @@ (define-public python-absl-py
(base32
"0ga3b0m8lfsv1m3260p83lhis52yvz3d42q8gip4gfj823849hnj"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/abseil/abseil-py")
(synopsis "Abseil Python common libraries")
(description
@@ -26149,7 +26232,8 @@ (define-public python-trio-typing
(sha256
(base32 "15wa66cs165wawh4pi808ac43n67b8jqddi5ppdcbkj5gfi68hpi"))))
(build-system pyproject-build-system)
- (native-inputs (list python-attrs python-pytest))
+ (native-inputs (list python-attrs python-pytest python-setuptools
+ python-wheel))
(propagated-inputs
(list python-mypy python-mypy-extensions python-trio
python-typing-extensions))
@@ -27291,7 +27375,7 @@ (define-public python-funcparserlib
(when tests?
(invoke "python" "-m" "unittest" "discover" "-v")))))))
;; ModuleNotFoundError: No module named 'poetry'
- (native-inputs (list python-poetry-core))
+ (native-inputs (list python-poetry-core python-six))
(home-page "https://github.com/vlasovskikh/funcparserlib")
(synopsis
"Recursive descent parsing library based on functional combinators")
@@ -27575,7 +27659,9 @@ (define-public python-watchgod
python-pytest-cov
python-pytest-mock
python-pytest-sugar
- python-pytest-toolbox))
+ python-pytest-toolbox
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/samuelcolvin/watchgod")
(synopsis "Simple, modern file watching and code reload in Python")
(description
@@ -28838,7 +28924,7 @@ (define-public python-blessed
;; Avoid python-pytest-coverage
#:test-flags '(list "-c /dev/null")))
(propagated-inputs (list python-six python-wcwidth))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/jquast/blessed")
(synopsis "Wrapper around terminal capabilities")
(description
@@ -29105,7 +29191,8 @@ (define-public python-dateparser
(list python-dateutil python-pytz python-regex python-ruamel.yaml
python-tzlocal))
(native-inputs
- (list python-flake8 python-pytest python-parameterized tzdata-for-tests))
+ (list python-flake8 python-pytest python-parameterized tzdata-for-tests
+ python-setuptools python-wheel))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -29802,7 +29889,9 @@ (define-public python-loguru
python-sphinx
python-sphinx-autobuild
python-sphinx-rtd-theme
- python-tox))
+ python-tox
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/Delgan/loguru")
(synopsis "Python logging made (stupidly) simple")
(description "Python logging made (stupidly) simple")
@@ -31896,6 +31985,7 @@ (define-public python-types-requests
"0cas3cjkhrvsz2rmqnhqiihy9j79wxi9xbih8jk0p9r48c2q3iyy"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-types-urllib3))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python/typeshed")
(synopsis "Typing stubs for requests")
(description "This package provides typing stubs for requests.")
@@ -31928,6 +32018,7 @@ (define-public python-types-urllib3
(base32
"0zcipjdnbnc8ymk8mh9n5mypa0qr03rqj98lbmahldcdrrap6md1"))))
(build-system pyproject-build-system)
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/python/typeshed")
(synopsis "Typing stubs for urllib3")
(description "This package provides typing stubs for urllib3.")
@@ -31945,6 +32036,7 @@ (define-public python-typeshed-client
"1vdwp1jjg27b22qxgm49v21nb8vm1iki3bfsm0fnq2rsz5alfwz2"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-importlib-resources))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/JelleZijlstra/typeshed_client")
(synopsis "Library for accessing stubs in typeshed")
(description
@@ -32349,7 +32441,9 @@ (define-public python-srsly
python-pytest-timeout
python-mock
python-numpy
- python-psutil))
+ python-psutil
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/explosion/srsly")
(synopsis "Serialization utilities for Python")
(description "This package bundles some of the best Python serialization
@@ -32578,7 +32672,7 @@ (define-public python-iteround
(base32 "1irw4sqrsgpc0ibxdv1hlx0d0jr1fqs48bj6mpfylzqkag9ywlfj"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-pytest))
+ (list python-pytest python-setuptools python-wheel))
(home-page "https://github.com/cgdeboer/iteround")
(synopsis "Sum-safe rounding for Iterables")
(description "Iteround is a standard library sum-safe rounding library for
@@ -32692,7 +32786,10 @@ (define-public python-deepdiff
python-mock
python-numpy
python-pytest
- python-pyyaml))
+ python-pyyaml
+ python-setuptools
+ python-wheel
+ python-toml))
(home-page "https://github.com/seperman/deepdiff")
(synopsis "Deep difference and search of any Python object/data")
(description
@@ -32721,7 +32818,9 @@ (define-public python-deepmerge
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
(native-inputs
(list python-setuptools-scm
- python-pytest))
+ python-pytest
+ python-setuptools
+ python-wheel))
(home-page "https://deepmerge.readthedocs.io/en/latest/")
(synopsis "Merge nested data structures")
(description
@@ -33146,7 +33245,7 @@ (define-public python-cogapp
(base32
"1c0xx3p3lzrlyqhmccyq9c50f8v9pqk2992gb4nl50h2yy1m3s8v"))))
(build-system pyproject-build-system)
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(home-page "https://nedbatchelder.com/code/cog")
(synopsis "Content generation tool that leverages Python")
(description "Cog is a file generation tool. It allows using pieces of
@@ -33556,7 +33655,10 @@ (define-public staticsite
python-ruamel.yaml
python-slugify
python-tornado
- tzdata-for-tests))
+ tzdata-for-tests
+ python-setuptools
+ python-wheel
+ python-toml))
(home-page "https://github.com/spanezz/staticsite")
(synopsis "Static site generator")
(description "Statistic is a static site generator based on Markdown and
@@ -33632,8 +33734,9 @@ (define-public python-zbarlight
(base32
"1v5c9bim8af6g8kgxp2dhm96n5vkr8sqi56w0bdh1xy49v03lw3g"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-pillow))
+ (propagated-inputs (list python-pillow python-setuptools))
(inputs (list zbar))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/Polyconseil/zbarlight")
(synopsis "Simple Python wrapper for the zbar barcode library")
(description "Zbarlight is a simple wrapper for the zbar library. It can
@@ -33652,6 +33755,7 @@ (define-public python-zeroc-ice
"0bqkrjxp2fbz34x3wxkxji39kxinypzg8q2994sibiay29mpipxb"))))
(build-system pyproject-build-system)
(inputs (list openssl))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://zeroc.com")
(synopsis "RPC framework")
(description
@@ -3220,7 +3220,8 @@ (define-public python-sip
(native-inputs
(list python-wrapper))
(propagated-inputs
- (list python-toml python-packaging python-ply))
+ (list python-toml python-packaging python-ply python-setuptools
+ python-wheel))
(home-page "https://www.riverbankcomputing.com/software/sip/intro")
(synopsis "Python binding creator for C and C++ libraries")
(description
@@ -253,7 +253,7 @@ (define-public python-grpcio
(inputs
(list abseil-cpp-20211102.0 c-ares grpc-for-python-grpcio openssl re2 zlib))
(native-inputs
- (list python-cython))
+ (list python-cython python-setuptools python-wheel))
(propagated-inputs
(list python-six))
(home-page "https://grpc.io")
@@ -656,7 +656,9 @@ (define-public python-msgspec
python-mypy
python-pytest
python-setuptools-scm
- python-versioneer))
+ python-versioneer
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-pyyaml python-tomli python-tomli-w))
(home-page "https://jcristharif.com/msgspec/")
(synopsis "Fast serialization/validation library")
@@ -371,7 +371,9 @@ (define-public python-sphinx-panels
(propagated-inputs (list python-docutils-0.15 python-sphinx-4))
(native-inputs
(list python-pytest
- python-pytest-regressions))
+ python-pytest-regressions
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/executablebooks/sphinx-panels")
(synopsis "Sphinx extension for creating panels in a grid layout")
(description
@@ -2049,7 +2049,7 @@ (define-public python-vega-datasets
;; Remove dataset with unclear license.
(lambda _
(delete-file "vega_datasets/_data/la-riots.csv"))))))
- (native-inputs (list python-pytest))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
(propagated-inputs (list python-pandas))
(home-page "https://github.com/altair-viz/vega_datasets")
(synopsis "Example datasets used by Vega-related projects")
@@ -2082,6 +2082,7 @@ (define-public python-altair
python-jsonschema
python-numpy
python-pandas
+ python-setuptools
python-toolz
python-typing-extensions))
(native-inputs (list python-black
@@ -2115,7 +2116,8 @@ (define-public python-hdmedians
(lambda _
;; Cython extensions have to be built before running the tests.
(invoke "python" "setup.py" "build_ext" "--inplace"))))))
- (propagated-inputs (list python-cython python-numpy))
+ (propagated-inputs (list python-cython python-numpy python-setuptools
+ python-wheel))
(native-inputs (list python-nose))
(home-page "http://github.com/daleroberts/hdmedians")
(synopsis "High-dimensional medians")
@@ -2165,7 +2167,9 @@ (define-public python-arviz
python-scipy
python-typing-extensions
python-xarray
- python-xarray-einstats))
+ python-xarray-einstats
+ python-setuptools
+ python-wheel))
(home-page "https://github.com/arviz-devs/arviz")
(synopsis "Exploratory analysis of Bayesian models")
(description
@@ -2307,7 +2311,9 @@ (define-public python-statsmodels
python-pytest
python-pytest-randomly
python-pytest-xdist
- python-setuptools-scm))
+ python-setuptools-scm
+ python-setuptools
+ python-wheel))
(home-page "https://statsmodels.sourceforge.net/")
(synopsis "Statistical modeling and econometrics in Python")
(description
@@ -99,6 +99,7 @@ (define-module (gnu packages terminals)
#:use-module (gnu packages popt)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
@@ -244,8 +245,8 @@ (define-public asciinema
(substitute* "tests/pty_test.py"
(("python3") (search-input-file inputs "/bin/python3"))))))))
(native-inputs
- ;; For tests.
- (list python-pytest))
+ (list python-pytest ; For tests.
+ python-setuptools python-wheel))
(home-page "https://asciinema.org")
(synopsis "Terminal session recorder")
(description
@@ -245,6 +245,7 @@ (define-public python-dateutils
"1wg3f3imjq3snvjccv64h5498pqv9xz664xhni7bsh8mnay91p83"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-dateutil python-pytz))
+ (native-inputs (list python-setuptools python-wheel))
(home-page "https://github.com/jmcantrell/python-dateutils")
(synopsis "Various utilities for working with date and datetime objects")
(description
@@ -328,7 +329,7 @@ (define-public python-timezonefinder
;; It's optional, remove this constrain where python-pytz is updated.
#:test-flags #~(list "-k" "not test_with_pytz")))
(native-inputs
- (list python-poetry-core python-pytest))
+ (list python-poetry-core python-pytest python-setuptools))
(propagated-inputs
(list python-cffi python-h3-3 python-numba python-numpy python-pytz))
(home-page "https://timezonefinder.michelfe.it/gui")
@@ -50,6 +50,7 @@ (define-module (gnu packages tor)
#:use-module (gnu packages glib)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-check)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
@@ -446,7 +447,8 @@ (define-public tractor
"1542g6alycwlmvndxcijzn4d5lgycmxxb78gqd8qwgm9kw0fnr3q"))))
(build-system pyproject-build-system)
(native-inputs
- (list (list glib "bin"))) ; for glib-compile-schemas.
+ (list python-setuptools python-wheel
+ (list glib "bin"))) ; for glib-compile-schemas.
(inputs
(list python-fire
python-psutil
@@ -29,6 +29,7 @@ (define-module (gnu packages tree-sitter)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages node)
+ #:use-module (gnu packages python-build)
#:use-module (guix build-system cargo)
#:use-module (guix build-system gnu)
#:use-module (guix build-system pyproject)
@@ -86,7 +87,8 @@ (define-public python-tree-sitter
name)))))))))
(inputs (list tree-sitter))
(native-inputs
- (list tree-sitter-python tree-sitter-javascript))
+ (list tree-sitter-python tree-sitter-javascript
+ python-setuptools python-wheel))
(home-page "https://github.com/tree-sitter/py-tree-sitter")
(synopsis "Python bindings to the Tree-sitter parsing library")
(description "This package provides Python bindings to the
@@ -5051,7 +5051,7 @@ (define-public gaupol
"1z9j3r9pm4rdynlmhgsgnwnnaqw5274yfy4kyillgd77msnpbhaw"))))
(build-system pyproject-build-system)
(native-inputs
- (list gettext-minimal pkg-config))
+ (list gettext-minimal pkg-config python-setuptools python-wheel))
(inputs
(list python-pygobject
gtk+
@@ -65,6 +65,7 @@ (define-module (gnu packages vim)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
@@ -935,7 +936,8 @@ (define-public python-neovim-remote
(base32
"00kxlb3f1k7iaxzpsr07scavmnyg8c1jmicmr13mfk2lcdac6g2b"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-psutil python-pynvim))
+ (propagated-inputs (list python-psutil python-pynvim python-setuptools))
+ (native-inputs (list python-wheel))
(home-page "https://github.com/mhinz/neovim-remote")
(synopsis "Control nvim processes using `nvr` commandline tool")
(description "This package provide a `nvr` command, which can open File in
@@ -52,7 +52,12 @@ (define (default-python)
"Return the default Python package."
;; Lazily resolve the binding to avoid a circular dependency.
(let ((python (resolve-interface '(gnu packages python))))
- (module-ref python 'python-toolchain)))
+ ;; We are using python-sans-pip-wrapper, because it does not contain
+ ;; setuptools. This allows us to skip the dependency on setuptools for
+ ;; packages which don’t need it. And it allows us to more easily swap
+ ;; out setuptools if a different version is required.
+ ;; Using python-toolchain here might cause dependency cycles.
+ (module-ref python 'python-sans-pip-wrapper)))
(define sanity-check.py
(search-auxiliary-file "python/sanity-check.py"))
Hi, the attached patches contain various Python build system improvements including an original TOML parser (which may be used by other build systems and importers in the future too) and fixes for #62781 and #63044. I’m also pushing the patches to the pyproject-toml branch. As always, a world rebuild is required. Cheers, Lars Lars-Dominik Braun (8): build-system/pyproject: Use python-sans-pip-wrapper as default-python. build-system/python: Ignore symlinks when changing mtime. gnu: criu: Change file mtimes to fix build. gnu: sssd: Change file mtimes to fix build. guix: toml: Add TOML parser. build-system/pyproject: Use TOML parser. gnu: python-pytest-xdist: Disable failing test. guix: pyproject-build-system: Default configure-flags to empty dictionary. Makefile.am | 2 + gnu/packages/admin.scm | 2 +- gnu/packages/astronomy.scm | 81 +++-- gnu/packages/bioinformatics.scm | 79 +++-- gnu/packages/bootloaders.scm | 3 + gnu/packages/build-tools.scm | 10 +- gnu/packages/check.scm | 14 +- gnu/packages/databases.scm | 12 +- gnu/packages/digest.scm | 2 +- gnu/packages/engineering.scm | 2 +- gnu/packages/fontutils.scm | 9 +- gnu/packages/geo.scm | 10 +- gnu/packages/graph.scm | 7 +- gnu/packages/graphviz.scm | 4 +- gnu/packages/license.scm | 5 +- gnu/packages/machine-learning.scm | 32 +- gnu/packages/maths.scm | 4 +- gnu/packages/monitoring.scm | 2 +- gnu/packages/package-management.scm | 6 +- gnu/packages/potassco.scm | 10 +- gnu/packages/protobuf.scm | 4 +- gnu/packages/python-build.scm | 33 +- gnu/packages/python-check.scm | 30 +- gnu/packages/python-compression.scm | 20 +- gnu/packages/python-crypto.scm | 15 +- gnu/packages/python-science.scm | 24 +- gnu/packages/python-web.scm | 57 ++- gnu/packages/python-xyz.scm | 260 +++++++++----- gnu/packages/qt.scm | 3 +- gnu/packages/rpc.scm | 2 +- gnu/packages/serialization.scm | 4 +- gnu/packages/sphinx.scm | 4 +- gnu/packages/sssd.scm | 9 +- gnu/packages/statistics.scm | 14 +- gnu/packages/terminals.scm | 5 +- gnu/packages/time.scm | 3 +- gnu/packages/tor.scm | 4 +- gnu/packages/tree-sitter.scm | 4 +- gnu/packages/video.scm | 2 +- gnu/packages/vim.scm | 4 +- gnu/packages/virtualization.scm | 20 +- guix/build-system/pyproject.scm | 12 +- guix/build/pyproject-build-system.scm | 56 +-- guix/build/python-build-system.scm | 4 +- guix/build/toml.scm | 478 ++++++++++++++++++++++++++ tests/toml.scm | 442 ++++++++++++++++++++++++ 46 files changed, 1503 insertions(+), 306 deletions(-) create mode 100644 guix/build/toml.scm create mode 100644 tests/toml.scm base-commit: 5aceacac65784bd2e1fd12304f965ae6026de49d