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[bug#53402] Add python-mne

Message ID c34c3dd954eea62f2e31abf6da5f6d7517b4a9b1.camel@planete-kraus.eu
State New
Headers show
Series [bug#53402] Add python-mne | expand

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Commit Message

Vivien Kraus Jan. 20, 2022, 10:46 p.m. UTC 
Dear guix,

I am trying to get python-mne package [1]. So far I’ve managed to get
all the advertised dependencies, but I can’t get the tests to pass.

For python-nitime, I get IndexError: tuple index out of range

For python-mne, I get TypeError: annotate_nan() missing 1 required
positional argument: 'raw'

Both errors seem to occur because a function with optional or keyword
arguments is called without enough arguments. However, I can disable
all tests that call the function, but the error stays there.

Can someone help me?

Best regards,

Vivien


[1]: https://mne.tools/stable/index.html
diff mbox series

Patch

From 5c8b341c7d39cc88d723788416865e4d9e26b331 Mon Sep 17 00:00:00 2001
From: Vivien Kraus <vivien@planete-kraus.eu>
Date: Thu, 20 Jan 2022 15:39:12 +0100
Subject: [PATCH 01/18] gnu: Add python-imageio-ffmpeg.

* gnu/packages/python-xyz.scm (python-imageio-ffmpeg): New variable.
---
 gnu/packages/python-xyz.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index eff1c4259b..c0b1fe9872 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -28678,3 +28678,36 @@  (define-public python-reedsolo
 but not binary streams.")
     (license license:public-domain)))
 
+(define-public python-imageio-ffmpeg
+  (package
+    (name "python-imageio-ffmpeg")
+    (version "0.4.5")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "imageio-ffmpeg" version))
+              (sha256
+               (base32
+                "0ff14079izsyxwf6ki68k9a7w5krjlal7lwqvzg2bbddl92l5spj"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases (modify-phases %standard-phases
+                  (add-after 'unpack 'set-ffmpeg-exe
+                    (lambda* (#:key inputs #:allow-other-keys)
+                      ;; There are different strategies to find ffmpeg, we
+                      ;; only fix the last resort, "system ffmpeg command"
+                      (substitute* "imageio_ffmpeg/_utils.py"
+                        (("exe = \"ffmpeg\"")
+                         (format #f "exe = ~s"
+                                 (search-input-file
+                                  inputs "/bin/ffmpeg")))))))))
+    (inputs (list ffmpeg))
+    (home-page "https://github.com/imageio/imageio-ffmpeg")
+    (synopsis "@samp{ffmpeg} wrapper for Python")
+    (description
+     "The purpose of this project is to provide a simple and reliable
+@samp{ffmpeg} wrapper for working with video files.  It implements two simple
+generator functions for reading and writing data from/to ffmpeg, which
+reliably terminate the ffmpeg process when done.  It also takes care of
+publishing platform-specific wheels that include the binary @samp{ffmpeg}
+executables.")
+    (license license:bsd-2)))
-- 
2.34.0