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Change-Id: I733fb464d2a3c7fd1335826be9f23e2610e6fd60 --- gnu/packages/cran.scm | 41 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 57dabc8ec3..46749aa714 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -41612,6 +41612,47 @@ (define-public r-metadat analyses.") (license license:gpl2+))) +(define-public r-metadeconfoundr + ;; There are some consistent updates after the release of version 0.3.0. + (let ((commit "90aec0226c5128bfcbbc08903452eff460d21424") + (revision "1")) + (package + (name "r-metadeconfoundr") + (version (git-version "0.3.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/TillBirkner/metadeconfoundR") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0zkqar27p5qwq46xbxsw5x1pl50xbkgqiizw5bydlyhwb0ga2f3h")))) + (properties `((upstream-name . "metadeconfoundR"))) + (build-system r-build-system) + (propagated-inputs (list r-bigmemory + r-detectseparation + r-doparallel + r-dosnow + r-foreach + r-futile-logger + r-ggplot2 + r-lme4 + r-lmtest + r-reshape2 + r-snow)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/TillBirkner/metadeconfoundR") + (synopsis "Check multiple covariates for potenial confounding effects") + (description + "This package detects naive associations between omics features and +metadata in cross-sectional data-sets using non-parametric tests. In a second +step, confounding effects between metadata associated to the same omics feature +are detected and labeled using nested post-hoc model comparison tests. The +generated output can be graphically summarized using the built-in plotting +function.") + (license license:gpl2)))) + (define-public r-mathjaxr (package (name "r-mathjaxr")