diff mbox series

[bug#64438] gnu: Add python-gatspy.

Message ID b5ff7de80a80822635df4b8a5376401c49f6d04a.1688396891.git.navid.afkhami@mdc-berlin.de
State New
Headers show
Series [bug#64438] gnu: Add python-gatspy. | expand

Commit Message

nafkhamdc July 3, 2023, 3:08 p.m. UTC 
* gnu/packages/bioinformatics.scm (python-gatspy): New variable.
---
 gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)


base-commit: 29ccd7cac93da290e1d0466a1d33748ad4ccbf08
prerequisite-patch-id: 2e072dec7e75b2dcc08789c562b9c3f8491fc05f

Comments

Ricardo Wurmus July 3, 2023, 3:46 p.m. UTC | #1 
Thanks for the patch!

I noticed that some of the tests only failed because we didn’t have
astroML.  So I packaged it and added it to the inputs, so now only two
tests are disabled.

Pushed it to the master branch with commit
07f083e94f4f5c5f53e4d8aa644de2064a6256c9.
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0f3f64b98f..47ea11fa53 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3477,6 +3477,34 @@  (define-public python-pysam
 also includes an interface for tabix.")
     (license license:expat)))
 
+(define-public python-gatspy
+  (package
+    (name "python-gatspy")
+    (version "0.3")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "gatspy" version))
+              (sha256
+               (base32
+                "1gw2z6x8nikvnw2gkdl70gr81cwczd1pd7v8ry2kjn6k4kssrfav"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list #:test-flags '(list "-k"
+                               ;; These tests require internet access
+                               (string-append "not test_download_data.py"
+                                " and not test_rrlyrae.py"
+                                " and not test_rrlyrae_lightcurves"
+                                " and not test_rrlyrae_generated.py"
+                                " and not test_lomb_scargle.py"
+                                " and not test_supersmoother.py"
+                                " and not test_templates.py"))))
+    (propagated-inputs (list python-numpy python-scipy))
+    (native-inputs (list python-pytest python-nose python-setuptools-scm))
+    (home-page "https://github.com/astroml/gatspy")
+    (synopsis "General tools for astronomical time series in Python")
+    (description "General tools for astronomical time series in Python")
+    (license license:bsd-2)))
+
 (define-public python-twobitreader
   (package
     (name "python-twobitreader")