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[bug#66515] gnu: Add r-mafh5-gnomad-v3-1-2-grch38.

Message ID a9e93013af91a26f43f33a3cc105924ecac128ea.1697199129.git.Navid.Afkhami@mdc-berlin.de
State New
Headers show
Series [bug#66515] gnu: Add r-mafh5-gnomad-v3-1-2-grch38. | expand

Commit Message

nafkhamdc Oct. 13, 2023, 12:12 p.m. UTC 
* gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): New variable.
---
 gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)


base-commit: 844dd7dac76fa491a052df1d117a5d817cc8087c

Comments

Ricardo Wurmus Oct. 13, 2023, 12:49 p.m. UTC | #1 
Applied after moving to annotation section.

Thank you!
diff mbox series

Patch

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f6946b72c8..c3e65dda56 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1711,6 +1711,36 @@  (define-public r-italicsdata
     ;; Expanded from GPL
     (license (list license:gpl2+ license:gpl3+))))
 
+(define-public r-mafh5-gnomad-v3-1-2-grch38
+  (package
+    (name "r-mafh5-gnomad-v3-1-2-grch38")
+    (version "3.15.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "MafH5.gnomAD.v3.1.2.GRCh38" version
+                              'annotation))
+       (sha256
+        (base32 "18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq"))))
+    (properties `((upstream-name . "MafH5.gnomAD.v3.1.2.GRCh38")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-bsgenome
+                             r-genomeinfodb
+                             r-genomicranges
+                             r-genomicscores
+                             r-hdf5array
+                             r-iranges
+                             r-rhdf5
+                             r-s4vectors))
+    (home-page "https://bioconductor.org/packages/MafH5.gnomAD.v3.1.2.GRCh38")
+    (synopsis
+     "Minor allele frequency data from gnomAD version 3.1.2 for GRCh38")
+    (description
+     "This package is designed to store minor allele frequency data.
+It retrieves this data from the Genome Aggregation Database
+(@code{gnomAD} version 3.1.2) for the human genome version GRCh38.")
+    (license license:artistic2.0)))
+
 (define-public r-macrophage
   (package
     (name "r-macrophage")