From patchwork Wed Jan 6 18:47:58 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Greg Hogan X-Patchwork-Id: 26251 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C11B827BC0E; Wed, 6 Jan 2021 18:49:14 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, HTML_MESSAGE,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL, SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 3361027BC0D for ; Wed, 6 Jan 2021 18:49:14 +0000 (GMT) Received: from localhost ([::1]:37620 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kxDrt-0002qn-8S for patchwork@mira.cbaines.net; Wed, 06 Jan 2021 13:49:13 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:57572) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kxDri-0002oj-D9 for guix-patches@gnu.org; Wed, 06 Jan 2021 13:49:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:34002) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kxDrh-0005dz-So for guix-patches@gnu.org; Wed, 06 Jan 2021 13:49:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1kxDrh-0008Rc-Rd for guix-patches@gnu.org; Wed, 06 Jan 2021 13:49:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#45699] [PATCH] gnu: python-scipy: Update to 1.6.0. Resent-From: Greg Hogan Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 06 Jan 2021 18:49:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 45699 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 45699@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.160995890032401 (code B ref -1); Wed, 06 Jan 2021 18:49:01 +0000 Received: (at submit) by debbugs.gnu.org; 6 Jan 2021 18:48:20 +0000 Received: from localhost ([127.0.0.1]:45546 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kxDqy-0008QR-D4 for submit@debbugs.gnu.org; Wed, 06 Jan 2021 13:48:20 -0500 Received: from lists.gnu.org ([209.51.188.17]:59028) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1kxDqw-0008QE-WC for submit@debbugs.gnu.org; Wed, 06 Jan 2021 13:48:15 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:57374) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kxDqw-0002Pw-Na for guix-patches@gnu.org; Wed, 06 Jan 2021 13:48:14 -0500 Received: from mail-wm1-x331.google.com ([2a00:1450:4864:20::331]:55677) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1kxDqt-0005O6-Do for guix-patches@gnu.org; Wed, 06 Jan 2021 13:48:14 -0500 Received: by mail-wm1-x331.google.com with SMTP id c124so3214143wma.5 for ; Wed, 06 Jan 2021 10:48:11 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=greghogan-com.20150623.gappssmtp.com; s=20150623; h=mime-version:from:date:message-id:subject:to; bh=F0bq4pBVsH0Hf4Ujx/NKgwQgTslYbzx+NUGxMruekiE=; b=VjuIb4IfnrA7rQUh2oUPxPYqb3BkmjhiC4BDzjJCtgayEWxgExdV/RBBg2ZI3zX5qG em4nYkKyQv0sXaZSCc7VW8cxB9QF0IWZJCnRquJXcBEDpzSWrQZzc1ErD2gvZ83FQMRo XVNbJSlaCzDwWpKQTmmhPHQuz0K37uNkzU8kD7GuBqX8u7EjshdJdU45NvidtU0HB0du Hp9gpiHlbm+JVI0AKXDj/OG5vo9dosoiCyPRz6mASVSOcrpXdCe0iRn8OM76WcaCKm/L TUKdbLgndFOMPWbLel8t/+E/9KqH2hc2FDcoWjvlObPiZVpytM0Vr9+nVpXEQD7e2Kyb jDng== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:from:date:message-id:subject:to; bh=F0bq4pBVsH0Hf4Ujx/NKgwQgTslYbzx+NUGxMruekiE=; b=aD4j3wgWnAz4csHO3W7oMdqw7foQdSJRGiAu1pULGn1K3LqF9Y4AekB1Tdo5weAPhp qLID/4PLYTQCgG7dhxpGavjt7b/v8gRSwilCLNYLghqZbjFr8nCA5LV+qJ9VA3kZpuMz 0r8E0/k7D05s4KMo6N4+GcKKA7y4kuio5wJJSh19IGR28yPmP6XEebepzbPiHAw/awZm QNMTd30SC55BJu9tfxDvGr0IK1/b3dKOaKz+g54Z5h4TaTOLYT2/1RYgQWSZ9Cq/nV84 uc2j5pOzWv24M5NVe9X1Uv62NmXot6IGTz+VwSl00KdMdBBGx8D2mm9YNufRF6Lg5iuD QAQw== X-Gm-Message-State: AOAM532lbAUTerYtXc7xwYqdjQcYSgXdDvAF+zDrW/iNb9yDYSvKJ1Iq uhDcEeZw5ClIAoxLO7RbWhxG+oxNz1eDq3T6pe0iF1AHHor4W2p6FPk= X-Google-Smtp-Source: ABdhPJzM2CQIQrqUZKOj1tnV6vrKl+qbjenhuvv8BhW8OqFtjttEsUuSgQ0gij9L+aoyQ3aHS1KjiHXcQFfKsFjE7QA= X-Received: by 2002:a1c:2b46:: with SMTP id r67mr4856631wmr.162.1609958889929; Wed, 06 Jan 2021 10:48:09 -0800 (PST) MIME-Version: 1.0 From: Greg Hogan Date: Wed, 6 Jan 2021 13:47:58 -0500 Message-ID: Received-SPF: none client-ip=2a00:1450:4864:20::331; envelope-from=code@greghogan.com; helo=mail-wm1-x331.google.com X-Spam_score_int: -18 X-Spam_score: -1.9 X-Spam_bar: - X-Spam_report: (-1.9 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_NONE=0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches From d03cf7fcf8351827dcf5d1a342c26bc5ffee7046 Mon Sep 17 00:00:00 2001 From: Greg Hogan Date: Tue, 5 Jan 2021 17:09:15 +0000 Subject: [PATCH] gnu: python-scipy: Update to 1.6.0. * gnu/packages/python-xyz.scm (python-scipy): Update to 1.6.0. [inputs]: Add pybind11. [arguments]<#:phases>['change-home-dir]: New phase. --- gnu/packages/python-science.scm | 13 ++++++++++--- 1 file changed, 10 insertions(+), 3 deletions(-) "scipy/sparse/linalg/dsolve/tests/test_linsolve.py" diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 99903ef247..a1e2b57669 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -10,6 +10,7 @@ ;;; Copyright © 2019 Giacomo Leidi ;;; Copyright © 2020 Pierre Langlois ;;; Copyright © 2020 Vinicius Monego +;;; Copyright © 2021 Greg Hogan ;;; ;;; This file is part of GNU Guix. ;;; @@ -50,13 +51,13 @@ (define-public python-scipy (package (name "python-scipy") - (version "1.3.2") + (version "1.6.0") (source (origin (method url-fetch) (uri (pypi-uri "scipy" version)) (sha256 - (base32 "192d8dsybvhv19igkrsafbdafx198nz7pibkjgrqjhlr66s3jfd0")))) + (base32 "0rh5b1rwdcvvagld8vpxnpaibszy1skpx39a0fwzd5gx5pwcjvfb")))) (build-system python-build-system) (propagated-inputs `(("python-numpy" ,python-numpy) @@ -64,7 +65,8 @@ ("python-pyparsing" ,python-pyparsing))) (inputs `(("lapack" ,lapack) - ("openblas" ,openblas))) + ("openblas" ,openblas) + ("pybind11" ,pybind11))) (native-inputs `(("python-cython" ,python-cython) ("python-pytest" ,python-pytest) @@ -77,6 +79,11 @@ (arguments `(#:phases (modify-phases %standard-phases + (add-before 'build 'change-home-dir + (lambda _ + ;; Change from /homeless-shelter to /tmp for write permission. + (setenv "HOME" "/tmp") + #t)) (add-after 'unpack 'disable-broken-tests (lambda _ (substitute*