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References: <86f4a95a7ee7469b7e79f26a481700f6ba2d1395.1692962151.git.navid.afkhami@mdc-berlin.de> In-Reply-To: <86f4a95a7ee7469b7e79f26a481700f6ba2d1395.1692962151.git.navid.afkhami@mdc-berlin.de> Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 28 Aug 2023 12:35:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 65530 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <65530@debbugs.gnu.org> Cc: Navid Afkhami Received: via spool by 65530-submit@debbugs.gnu.org id=B65530.169322608714521 (code B ref 65530); Mon, 28 Aug 2023 12:35:01 +0000 Received: (at 65530) by debbugs.gnu.org; 28 Aug 2023 12:34:47 +0000 Received: from localhost ([127.0.0.1]:47329 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qabSA-0003m8-L8 for submit@debbugs.gnu.org; Mon, 28 Aug 2023 08:34:46 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:49489) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qabS7-0003lr-76 for 65530@debbugs.gnu.org; Mon, 28 Aug 2023 08:34:45 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1693226069; x=1695040470; bh=nepYGk822if6Uy5 QLV3Hq5dsNW/AQ+INh3sYduuSYmw=; b=ROQRSTe879fBF+rYumKpM3+mTKW5V/1 0I5x2Yn30ZaEsDGuexMXbI/hQFPJ4kS01lW5wOZAvgMEzH3NhtbB07A5QF22HBJA YkrATyAM2r0C5sTze381d/VsMsc5V/8bfjWRIucTHpvSE+wf+0kG869TiNgEx1Ia oL2r4mvahrZY= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 60C6CA026C for <65530@debbugs.gnu.org>; Mon, 28 Aug 2023 14:34:29 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Mon, 28 Aug 2023 14:34:28 +0200 From: Navid Afkhami Date: Mon, 28 Aug 2023 12:34:18 +0000 Message-ID: <97955c28991010a44b9c3579b1798fd38c20c6f5.1693226058.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27840.007 X-TM-AS-Result: No-10--2.247100-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeM3ZbGC9oP/O0op D+RCCRBkRRa406V/YwyBUGewL2YXt8Z8zsjIitoJ71Wx2uUbPLfkwFzTzcgzhF/TJVF6hUztqbs +nJ/tFJGGsZX0q3FpiOhAZQXEXXZuLJutez2dKWfi8zVgXoAltlPcOF1Vw1gmC24oEZ6SpSk6XE E7Yhw4FjQ/UKvyEzEdmunxcvFSUZxpxF/1UEQ/Df+ZeHsbkCeiD/7d8r9Y2GeU+WXlwWoNAOTfG rW0f9IgSnF4V/oqrxpgWgdYAwt8dbdKECLo/klXhRFX0MbNzemQ4JrfEHpLweZmgnjb/yyM1RkH asLA4hI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.247100-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27840.007 X-TM-SNTS-SMTP: E54F0E7497CF5EC95D0F50687837316C6EC9D00A892A8729BACF9E55462747ED2000:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-classdiscovery): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) base-commit: 4a49a89b09d07d96f4d6ef3c0ca93801370f7b20 diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0e01f3115d..81fe723779 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13924,6 +13924,31 @@ (define-public r-enrichplot All the visualization methods are developed based on ggplot2 graphics.") (license license:artistic2.0))) +;; This is a CRAN package, but it depends on Bioconductor packages and module. +;; That is why we added it here! +(define-public r-classdiscovery + (package + (name "r-classdiscovery") + (version "3.4.0") + (source (origin + (method url-fetch) + (uri (cran-uri "ClassDiscovery" version)) + (sha256 + (base32 + "06l7jvpcdynij05hb0ka33zpg7xdyqyzfzx24s0bnlspp83yc62s")))) + (properties `((upstream-name . "ClassDiscovery"))) + (build-system r-build-system) + (propagated-inputs (list r-biobase r-cluster r-mclust r-oompabase + r-oompadata)) + (home-page "http://oompa.r-forge.r-project.org/") + (synopsis + "Classes and Methods for \"Class Discovery\" with Microarrays or Proteomics") + (description + "This package defines classes for \"class discovery\" in OOMPA project. +Class discovery primarily consists of unsupervised clustering methods +with attempts to assess their statistical significance.") + (license license:asl2.0))) + (define-public r-clusterprofiler (package (name "r-clusterprofiler")