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Change-Id: Ia975cfcb9c79e59b029c6839dc87b5dcb89bf72a --- gnu/packages/bioinformatics.scm | 45 +++++++++++++++++++++++++++++++++ 1 file changed, 45 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d736abe07e..f959de7cd6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10247,6 +10247,51 @@ (define-public r-premessa bead-based normalization and debarcoding.") (license license:gpl3)))) +(define-public r-projectils + (let ((commit "cc73b97471b4b6eea11ce779b5c4a7dc5c3e1709") + (revision "1")) + (package + (name "r-projectils") + (version (git-version "3.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/carmonalab/ProjecTILs") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0dpzvbhhb9andnj7angpj32cgkwd6rs6qgpl6i21pqzcn6vqqhqw")))) + (properties `((upstream-name . "ProjecTILs"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocneighbors + r-biocparallel + r-dplyr + r-ggplot2 + r-matrix + r-patchwork + r-pheatmap + r-pracma + r-purrr + r-rcolorbrewer + r-reshape2 + r-scales + r-scgate + r-seurat + r-seuratobject + r-stacas + r-ucell + r-umap + r-uwot)) + (home-page "https://github.com/carmonalab/ProjecTILs") + (synopsis "Reference-based analysis of scRNA-seq data") + (description + "This package implements methods to project single-cell RNA-seq data onto +a reference atlas, enabling interpretation of unknown cell transcriptomic states +in the the context of known, reference states.") + (license license:gpl3)))) + (define-public r-presto (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad") (revision "0"))