From patchwork Sat Dec 30 19:36:17 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Troy Figiel X-Patchwork-Id: 58227 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 59FA227BBE2; Sat, 30 Dec 2023 19:46:17 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1DAA827BBE9 for ; Sat, 30 Dec 2023 19:46:14 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rJfHZ-0007ll-Hd; Sat, 30 Dec 2023 14:46:05 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rJfHW-0007lY-Qb for guix-patches@gnu.org; Sat, 30 Dec 2023 14:46:02 -0500 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rJfHV-0008LT-U3 for guix-patches@gnu.org; Sat, 30 Dec 2023 14:46:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rJfHW-0006vy-B8 for guix-patches@gnu.org; Sat, 30 Dec 2023 14:46:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#68156] [PATCH] gnu: python-hicexplorer: Fix build. Resent-From: Troy Figiel Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 30 Dec 2023 19:46:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 68156 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 68156@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.170396551421134 (code B ref -1); Sat, 30 Dec 2023 19:46:02 +0000 Received: (at submit) by debbugs.gnu.org; 30 Dec 2023 19:45:14 +0000 Received: from localhost ([127.0.0.1]:45106 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rJfGj-0005T6-NV for submit@debbugs.gnu.org; Sat, 30 Dec 2023 14:45:14 -0500 Received: from lists.gnu.org ([2001:470:142::17]:45956) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rJfGg-00050x-3i for submit@debbugs.gnu.org; Sat, 30 Dec 2023 14:45:12 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rJfGW-0007c6-Hk for guix-patches@gnu.org; Sat, 30 Dec 2023 14:45:01 -0500 Received: from mout-p-201.mailbox.org ([80.241.56.171]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_CHACHA20_POLY1305:256) (Exim 4.90_1) (envelope-from ) id 1rJfGU-0007x1-Od for guix-patches@gnu.org; Sat, 30 Dec 2023 14:45:00 -0500 Received: from smtp2.mailbox.org (smtp2.mailbox.org [10.196.197.2]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-201.mailbox.org (Postfix) with ESMTPS id 4T2XlB0kqTz9tCl for ; Sat, 30 Dec 2023 20:44:54 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=troyfigiel.com; s=MBO0001; t=1703965494; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=abkA1X0U9OmhZoFjEPTUilo/c9rjUCX234UA27nIEvo=; b=YII25ux6yjkhiXb77xFiFkjVeDUw9kaGKH0p8PCVS1kbyMqg7fjprEc89zVRxylGqrVTVf 1hp4u66Qe+tpXGS4M64VXsv6S5hP83jX1nkUttXbuuU6TA+gBw1YwRvEjxn0ksiiFFDRvj IbqtT23dBQlLTBzkSniBMIIYyTgC7+G/suZDB/rp75JmDWa1ruM9Si4kcwwdpWW0zm2Enq 5uqhU5U29GTHjF+ST+jqhh6Gi8WfECdkXNOTvqLuVhxyHa4QGQAj/SH+oQPH1J2OJFwRay JjPgTmhM7SgUM3KtvH99cN8T27pYuiASpNMusoPA9qy1/XaQW7R1IVW38H2oDg== From: Troy Figiel Date: Sat, 30 Dec 2023 20:36:17 +0100 Message-ID: <87sf3jtqz2.fsf@troyfigiel.com> MIME-Version: 1.0 Received-SPF: pass client-ip=80.241.56.171; envelope-from=troy@troyfigiel.com; helo=mout-p-201.mailbox.org X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_LOW=-0.7, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-hicexplorer)[snippet]: Remove catchall pattern of patch version numbers in setup.py. --- gnu/packages/bioinformatics.scm | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) base-commit: f24b14767d362a84e6469682b4fe303b50f4b589 diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index de37d19264..0fa0961735 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16602,7 +16602,16 @@ (define-public python-hicexplorer (file-name (git-file-name name version)) (sha256 (base32 - "1yavgxry38g326z10bclvdf8glmma05fxj5m73h15m1r2l9xmw3v")))) + "1yavgxry38g326z10bclvdf8glmma05fxj5m73h15m1r2l9xmw3v")) + (modules '((guix build utils))) + ;; setup.py is malformed. The requirements are defined using a catchall + ;; pattern for the patch version number. This has been fixed in version + ;; 3.7.3, but we cannot upgrade to this version yet, since some Guix + ;; packages are not new enough. (See upstream commit + ;; 4845c715ec7b105e938d0c2426e27d0181690bfe for the fix). + (snippet '(substitute* "setup.py" + (("\\.\\*") + ""))))) (build-system pyproject-build-system) (arguments (list