Message ID | 87mte1vy30.fsf@burningswell.com |
---|---|
State | Accepted |
Headers | show |
Series | [bug#56193] Add Climate Data Operators package | expand |
Context | Check | Description |
---|---|---|
cbaines/comparison | success | View comparision |
cbaines/git branch | success | View Git branch |
cbaines/applying patch | fail | View Laminar job |
cbaines/issue | success | View issue |
Roman! Roman Scherer 写道: > [roman@thinkpad guix]$ ./pre-inst-env guix lint cdo […] > error: html->sxml: unbound variable This is probably solved by running the command above in a guix shell: $ guix shell guix -- ./pre-inst-env guix lint cdo ‘pre-inst-env’ sets up some environment (variables) like GUILE_LOAD_PATH to ensure that Guix can run from your local git checkout, but nothing more. Most importantly, it does not create a full Guix profile with the numerous dependencies of the ‘guix’ package — including the ‘guile-lib’ package that provides HTML->SXML. That's what the ‘guix shell’ is for. It's a clean alternative to ‘guix install’ing all these guile-* packages into your user profile. Both work. Kind regards, T G-R
Hi Tobias, thanks for the tip. Unfortunately the command you sent me is not enough. I still get this error with `guix shell guix`: ``` [roman@thinkpad guix]$ guix shell guix -- ./pre-inst-env guix lint gdal ;;; note: source file /home/roman/workspace/guix/gnu/packages/geo.scm ;;; newer than compiled /home/roman/workspace/guix/gnu/packages/geo.go ;;; note: source file /home/roman/workspace/guix/gnu/packages/geo.scm ;;; newer than compiled /home/roman/.cache/guile/ccache/3.0-LE-8-4.5/home/roman/workspace/guix/gnu/packages/geo.scm.go ;;; Failed to autoload html->sxml in (htmlprag): ;;; no code for module (htmlprag) Backtrace: In ice-9/boot-9.scm: 1752:10 18 (with-exception-handler _ _ #:unwind? _ # _) In unknown file: 17 (apply-smob/0 #<thunk 7f09e3748f60>) In ice-9/boot-9.scm: 724:2 16 (call-with-prompt _ _ #<procedure default-prompt-handle…>) In ice-9/eval.scm: 619:8 15 (_ #(#(#<directory (guile-user) 7f09e3742c80>))) In guix/ui.scm: 2238:7 14 (run-guix . _) 2201:10 13 (run-guix-command _ . _) In ice-9/boot-9.scm: 1752:10 12 (with-exception-handler _ _ #:unwind? _ # _) 1752:10 11 (with-exception-handler _ _ #:unwind? _ # _) In guix/store.scm: 659:37 10 (thunk) In srfi/srfi-1.scm: 634:9 9 (for-each #<procedure 7f09e21bc9e0 at guix/scripts/lin…> …) In guix/scripts/lint.scm: 65:4 8 (run-checkers _ _ #:store _) In srfi/srfi-1.scm: 634:9 7 (for-each #<procedure 7f09d2d94c60 at guix/scripts/lin…> …) In guix/scripts/lint.scm: 74:21 6 (_ _) In guix/lint.scm: 1476:5 5 (check-for-updates #<package gdal@3.5.0 /home/roman/wor…>) 811:2 4 (call-with-networking-fail-safe _ _ _) In ice-9/boot-9.scm: 1752:10 3 (with-exception-handler _ _ #:unwind? _ # _) 1685:16 2 (raise-exception _ #:continuable? _) 1683:16 1 (raise-exception _ #:continuable? _) 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: error: html->sxml: unbound variable ``` However, after adding guile-lib to my home profile, it seems to work! Thanks, Roman. Tobias Geerinckx-Rice <me@tobias.gr> writes: > [[PGP Signed Part:Undecided]] > Roman! > > Roman Scherer 写道: >> [roman@thinkpad guix]$ ./pre-inst-env guix lint cdo > > […] > >> error: html->sxml: unbound variable > > This is probably solved by running the command above in a guix shell: > > $ guix shell guix -- ./pre-inst-env guix lint cdo > > ‘pre-inst-env’ sets up some environment (variables) like > GUILE_LOAD_PATH to ensure that Guix can run from your local git > checkout, but nothing more. > > Most importantly, it does not create a full Guix profile with the > numerous dependencies of the ‘guix’ package — including the > ‘guile-lib’ package that provides HTML->SXML. > > That's what the ‘guix shell’ is for. It's a clean alternative to > ‘guix install’ing all these guile-* packages into your user profile. > Both work. > > Kind regards, > > T G-R > > [[End of PGP Signed Part]]
Roman, Roman Scherer 写道: > thanks for the tip. Unfortunately the command you sent me is not > enough. I still get this error with `guix shell guix`: That's because I'm an old, who's still used to the (deprecated) ‘guix environment’, but wanted to sound hip by saying ‘guix shell’ instead. A recipe for failure. The two are semantically equivalent but not identical, so I should have said $ guix shell -D guix -- ./pre-inst-env stuff Note the -D, for --development (‘add P's inputs rather than P itself’). Nothing wrong with keeping guile-* packages in your user profile but the above is a bit cleaner. Kind regards, T G-R
Haha, ok. Thanks for the explanation Tobias. I think I leave it in my home profile, I already have some other guile packages in it. Tobias Geerinckx-Rice <me@tobias.gr> writes: > [[PGP Signed Part:Undecided]] > Roman, > > Roman Scherer 写道: >> thanks for the tip. Unfortunately the command you sent me is not >> enough. I still get this error with `guix shell guix`: > > That's because I'm an old, who's still used to the (deprecated) ‘guix > environment’, but wanted to sound hip by saying ‘guix shell’ instead. > A recipe for failure. > > The two are semantically equivalent but not identical, so I should > have said > > $ guix shell -D guix -- ./pre-inst-env stuff > > Note the -D, for --development (‘add P's inputs rather than P > itself’). > > Nothing wrong with keeping guile-* packages in your user profile but > the above is a bit cleaner. > > Kind regards, > > T G-R > > [[End of PGP Signed Part]]
Hi, Roman Scherer <roman.scherer@burningswell.com> skribis: > From d003fb5a519341a23973e8565ac7bc3195742808 Mon Sep 17 00:00:00 2001 > From: r0man <roman@burningswell.com> > Date: Sat, 25 Jun 2022 12:10:00 +0200 > Subject: [PATCH] Add Climate Data Operators package > > This patch adds CDO, a collection of command line Operators to manipulate and > analyse Climate and NWP model Data to Guix's geo module. I tweaked the description and commit log, change #:configure-flags to use the ‘this-package-input’ idiom, and committed. Thanks! Ludo’.
Cool, I didn't know about this-package-input. Thank you! Ludovic Courtès <ludo@gnu.org> writes: > Hi, > > Roman Scherer <roman.scherer@burningswell.com> skribis: > >> From d003fb5a519341a23973e8565ac7bc3195742808 Mon Sep 17 00:00:00 2001 >> From: r0man <roman@burningswell.com> >> Date: Sat, 25 Jun 2022 12:10:00 +0200 >> Subject: [PATCH] Add Climate Data Operators package >> >> This patch adds CDO, a collection of command line Operators to manipulate and >> analyse Climate and NWP model Data to Guix's geo module. > > I tweaked the description and commit log, change #:configure-flags to > use the ‘this-package-input’ idiom, and committed. > > Thanks! > > Ludo’.
From d003fb5a519341a23973e8565ac7bc3195742808 Mon Sep 17 00:00:00 2001 From: r0man <roman@burningswell.com> Date: Sat, 25 Jun 2022 12:10:00 +0200 Subject: [PATCH] Add Climate Data Operators package This patch adds CDO, a collection of command line Operators to manipulate and analyse Climate and NWP model Data to Guix's geo module. --- gnu/packages/geo.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm index 7b29c55088..7ce1d2bda2 100644 --- a/gnu/packages/geo.scm +++ b/gnu/packages/geo.scm @@ -119,6 +119,33 @@ (define-module (gnu packages geo) #:use-module (gnu packages xml) #:use-module (gnu packages xorg)) +(define-public cdo + (package + (name "cdo") + (version "2.0.5") + (source (origin + (method url-fetch) + (uri (string-append + "https://code.mpimet.mpg.de/attachments/download/26823/cdo-" + version ".tar.gz")) + (sha256 + (base32 + "1khdbd5cmnn7qm6hcqg4md5wbq14fs6brrns8b3g18diqgqvpvpd")))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags + (list (string-append "--with-netcdf=" (assoc-ref %build-inputs "netcdf"))))) + (inputs + (list netcdf)) + (native-inputs + (list pkg-config)) + (home-page "https://code.mpimet.mpg.de/projects/cdo") + (synopsis "Climate Data Operators") + (description "CDO is a collection of command line Operators to manipulate and analyse +Climate and NWP model Data. Supported data formats are GRIB 1/2, netCDF 3/4, +SERVICE, EXTRA and IEG. There are more than 600 operators available.") + (license license:bsd-3))) + (define-public memphis (package (name "memphis") -- 2.36.1