From patchwork Thu Nov 21 10:21:44 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: =?utf-8?q?Ludovic_Court=C3=A8s?= X-Patchwork-Id: 16175 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3C3451779E; Thu, 21 Nov 2019 10:23:28 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id F14EE1774C for ; Thu, 21 Nov 2019 10:23:27 +0000 (GMT) Received: from localhost ([::1]:38446 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iXjcV-0006JP-ID for patchwork@mira.cbaines.net; Thu, 21 Nov 2019 05:23:27 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:42968) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iXjbA-0004Gb-BA for guix-patches@gnu.org; Thu, 21 Nov 2019 05:22:05 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iXjb8-0002Ha-SQ for guix-patches@gnu.org; Thu, 21 Nov 2019 05:22:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:42484) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iXjb8-0002HW-Og for guix-patches@gnu.org; Thu, 21 Nov 2019 05:22:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iXjb8-0000FF-Jo for guix-patches@gnu.org; Thu, 21 Nov 2019 05:22:02 -0500 Subject: bug#38259: [PATCH] gnu: Add r-harmony. Resent-From: Ludovic =?utf-8?q?Court=C3=A8s?= Original-Sender: "Debbugs-submit" Resent-To: guix-patches@gnu.org Resent-Date: Thu, 21 Nov 2019 10:22:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: cc-closed 38259 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Cc: 38259-done@debbugs.gnu.org Mail-Followup-To: 38259@debbugs.gnu.org, ludo@gnu.org, madalinionel.patrascu@mdc-berlin.de Received: via spool by 38259-done@debbugs.gnu.org id=D38259.1574331718928 (code D ref 38259); Thu, 21 Nov 2019 10:22:02 +0000 Received: (at 38259-done) by debbugs.gnu.org; 21 Nov 2019 10:21:58 +0000 Received: from localhost ([127.0.0.1]:51304 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXjb3-0000Eu-N4 for submit@debbugs.gnu.org; Thu, 21 Nov 2019 05:21:57 -0500 Received: from eggs.gnu.org ([209.51.188.92]:33838) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iXjb1-0000Ei-W5 for 38259-done@debbugs.gnu.org; Thu, 21 Nov 2019 05:21:56 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]:56022) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1iXjav-00024K-Hn; Thu, 21 Nov 2019 05:21:49 -0500 Received: from wifi-eduroam-20-234.siege.inria.fr ([128.93.20.234]:53990 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1iXjas-0001Dx-It; Thu, 21 Nov 2019 05:21:46 -0500 From: Ludovic =?utf-8?q?Court=C3=A8s?= References: <20191118172216.21813-1-madalinionel.patrascu@mdc-berlin.de> Date: Thu, 21 Nov 2019 11:21:44 +0100 In-Reply-To: <20191118172216.21813-1-madalinionel.patrascu@mdc-berlin.de> (" =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= "'s message of "Mon, 18 Nov 2019 18:22:16 +0100") Message-ID: <87ftihil6v.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/26.3 (gnu/linux) MIME-Version: 1.0 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches Hello Mădălin, Mădălin Ionel Patrașcu skribis: > * gnu/packages/bioinformatics.scm (r-harmony): New variable. Applied with the changes below. Thank you! Ludo’. diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5da95d66a6..d1d17dc3d5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -15382,6 +15382,6 @@ containing the reference genome as well.") (synopsis "Fast, sensitive, and accurate integration of single cell data") (description "Harmony software is the R implementation of the algorithm with the same -name for single cell integration, described in Korsunsky et al 2018. Package +name for single cell integration, described in Korsunsky et al 2018. The package includes a standalone Harmony function and interfaces to external frameworks.") - (license license:gpl3)))) + (license license:gpl3+))))