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Sat, 14 Jan 2023 09:07:36 -0800 (PST) References: <877cxyp1wf.fsf@gmail.com> <87y1qdo3qq.fsf@gmail.com> <87wn5rfldh.fsf_-_@gnu.org> <875ydau2vf.fsf@gmail.com> <87wn5q9epc.fsf@gnu.org> User-agent: mu4e 1.8.13; emacs 28.2 From: =?utf-8?q?Tor-bj=C3=B6rn?= Claesson Date: Sat, 14 Jan 2023 19:06:29 +0200 In-reply-to: <87wn5q9epc.fsf@gnu.org> Message-ID: <87bkn1m4dj.fsf@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches And here is a second patch adding documentation to gdcm 3.0.20 Cheers, Tor-björn Claesson From 9ec1adbf72f3b122a484fe449e3b950fcee4b221 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Sat, 14 Jan 2023 19:03:39 +0200 Subject: [PATCH] gnu: gdcm: Add documentation. --- gnu/packages/bioinformatics.scm | 17 ++++++++++++++++- 1 file changed, 16 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5b886526ad..aa54ec7ff7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -93,6 +93,7 @@ (define-module (gnu packages bioinformatics) #:use-module (gnu packages gawk) #:use-module (gnu packages gcc) #:use-module (gnu packages gd) + #:use-module (gnu packages ghostscript) #:use-module (gnu packages golang) #:use-module (gnu packages glib) #:use-module (gnu packages graph) @@ -17854,8 +17855,16 @@ (define-public gdcm (base32 "1w78cmm9q7aavs7svdkl4dgilcqk4yazci9m6x7icrssb7cj991i")))) (build-system cmake-build-system) + (outputs '("out" "doc")) (arguments (list + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'set-HOME + ;; The build spams ‘Fontconfig error: No writable cache + ;; directories’ in a seemingly endless loop otherwise. + (lambda _ + (setenv "HOME" "/tmp")))) #:configure-flags #~(list "-DGDCM_BUILD_TESTING=true" (string-append "-DCMAKE_CTEST_ARGUMENTS=-E;" @@ -17863,7 +17872,13 @@ (define-public gdcm "|TestElement2" "|TestSCUValidation" "|TestEcho" - "|TestFind'")))) + "|TestFind'") + "-DGDCM_DOCUMENTATION:BOOL=ON" + "-DGDCM_PDF_DOCUMENTATION:BOOL=ON" + (string-append "-DGDCM_INSTALL_DOC_DIR=" + #$output:doc "/share/doc/" #$name) + "-DGDCM_BUILD_DOCBOOK_MANPAGES:BOOL=OFF"))) ; TODO: need ‘xsl-ns’ + (native-inputs (list doxygen ghostscript graphviz texlive)) (home-page "https://gdcm.sourceforge.net/wiki/index.php/Main_Page") (synopsis "Grassroots DICOM library") (description -- 2.38.1