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[212.90.81.204]) by smtp.gmail.com with ESMTPSA id m3-20020a056512114300b004cb454bf010sm703864lfg.267.2023.01.07.11.42.25 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 07 Jan 2023 11:42:25 -0800 (PST) User-agent: mu4e 1.8.13; emacs 28.2 From: =?utf-8?q?Tor-bj=C3=B6rn?= Claesson Date: Sat, 07 Jan 2023 21:40:42 +0200 Message-ID: <877cxyp1wf.fsf@gmail.com> MIME-Version: 1.0 Received-SPF: pass client-ip=2a00:1450:4864:20::12e; envelope-from=tclaesson@gmail.com; helo=mail-lf1-x12e.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Mailman-Approved-At: Sat, 07 Jan 2023 20:22:26 -0500 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches gnu/packages/image-processing.scm | 72 +++++++++++++++++++++++++++++++ 1 file changed, 72 insertions(+) diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm index 70c820e76b..271593b5f9 100644 --- a/gnu/packages/image-processing.scm +++ b/gnu/packages/image-processing.scm @@ -99,6 +99,7 @@ (define-module (gnu packages image-processing) #:use-module (gnu packages tls) #:use-module (gnu packages version-control) #:use-module (gnu packages video) + #:use-module (gnu packages web) #:use-module (gnu packages xiph) #:use-module (gnu packages xml) #:use-module (gnu packages xorg) @@ -1776,3 +1777,74 @@ (define-public charls to have them encoded to JPEG-LS, or JPEG-LS streams, which CharLS will decode to images.") (license license:bsd-3))) + +(define-public gdcm + (package + (name "gdcm") + (version "3.0.20") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/malaterre/GDCM/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1w78cmm9q7aavs7svdkl4dgilcqk4yazci9m6x7icrssb7cj991i")))) + (build-system cmake-build-system) + (outputs '("out" "doc")) + (arguments + (list #:tests? #f + #:phases #~(modify-phases %standard-phases + (add-before 'configure 'set-LDFLAGS + (lambda* (#:key inputs outputs #:allow-other-keys) + (setenv "LDFLAGS" + (string-append "-Wl,-rpath=" + #$output "/lib")))) + (add-before 'build 'patch-gdcm-charls.h + (lambda _ + (substitute* "../source/Utilities/gdcm_charls.h" + (("# include ") + "# include ")) #t))) + #:configure-flags #~(list "-DCMAKE_SKIP_RPATH:BOOL=YES" + "-DCMAKE_BUILD_TYPE:STRING=Release" + "-DCMAKE_C_FLAGS=-fvisibility=hidden" + "-DCMAKE_CXX_FLAGS=-fvisibility=hidden" + "-DGDCM_BUILD_SHARED_LIBS:BOOL=ON" + "-DGDCM_DOCUMENTATION:BOOL=ON" + "-DGDCM_USE_SYSTEM_EXPAT:BOOL=ON" + "-DGDCM_USE_SYSTEM_ZLIB:BOOL=ON" + "-DGDCM_USE_SYSTEM_CHARLS:BOOL=ON" + "-DGDCM_USE_SYSTEM_POPPLER:BOOL=ON" + "-DGDCM_USE_SYSTEM_LIBXML2:BOOL=ON" + "-DGDCM_USE_SYSTEM_JSON:BOOL=ON" + "-DGDCM_USE_SYSTEM_UUID:BOOL=ON" + "-DGDCM_USE_SYSTEM_OPENJPEG:BOOL=ON" + "-DGDCM_USE_SYSTEM_OPENSSL:BOOL=ON" + "-DGDCM_PDF_DOCUMENTATION:BOOL=OFF" + "-DGCM_BUILD_TESTING:BOOL=OFF" + "-DGDCM_BUILD_APPLICATIONS:BOOL=OFF" + "-DGDCM_USE_SYSTEM_PAPYRUS3:BOOL=OFF" + "-DGDCM_USE_SYSTEM_SOCKETXX:BOOL=OFF" + "-DGDCM_USE_SYSTEM_LJPEG:BOOL=OFF"))) + (inputs (list openssl + expat + charls + poppler + libxml2 + json-c + openjpeg + `(,util-linux "lib") + zlib)) + (native-inputs (list git pkg-config doxygen graphviz)) + (home-page "https://gdcm.sourceforge.net") + (synopsis + "C++ library dedicated to reading/parsing and writing DICOM medical files") + (description + "Grassroots DICOM (GDCM) is an implementation of the DICOM standard +designed to be open source so that researchers may access clinical data +directly. GDCM includes a file format definition and a network communications +protocol, both of which should be extended to provide a full set of tools for +a researcher or small medical imaging vendor to interface with an existing +medical database.") + (license license:bsd-3)))