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Sat, 14 Jan 2023 11:38:04 -0800 (PST) References: <877cxyp1wf.fsf@gmail.com> <87y1qdo3qq.fsf@gmail.com> <87wn5rfldh.fsf_-_@gnu.org> <875ydau2vf.fsf@gmail.com> <87wn5q9epc.fsf@gnu.org> User-agent: mu4e 1.8.13; emacs 28.2 From: =?utf-8?q?Tor-bj=C3=B6rn?= Claesson Date: Sat, 14 Jan 2023 21:34:44 +0200 In-reply-to: <87wn5q9epc.fsf@gnu.org> Message-ID: <877cxonbz7.fsf@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches And here is a patch which adds a "bin" output containing various utility-programs. Sorry for some slight spamming, but things suddenly started working=) With this I think the package is functionally complete and I will move on to using system libraries. Cheers, Tor-björn Claesson From 1b680bf73c6a62efd40d608c25e9b7815f03d786 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Tor-bj=C3=B6rn=20Claesson?= Date: Sat, 14 Jan 2023 21:17:23 +0200 Subject: [PATCH] gnu: gdcm: Add output "bin" --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++------ 1 file changed, 18 insertions(+), 6 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa54ec7ff7..e45d33ec2b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17855,29 +17855,41 @@ (define-public gdcm (base32 "1w78cmm9q7aavs7svdkl4dgilcqk4yazci9m6x7icrssb7cj991i")))) (build-system cmake-build-system) - (outputs '("out" "doc")) + (outputs '("out" "bin" "doc")) (arguments (list #:phases #~(modify-phases %standard-phases (add-before 'build 'set-HOME - ;; The build spams ‘Fontconfig error: No writable cache - ;; directories’ in a seemingly endless loop otherwise. - (lambda _ - (setenv "HOME" "/tmp")))) + ;; The build spams ‘Fontconfig error: No writable cache + ;; directories’ in a seemingly endless loop otherwise. + (lambda _ + (setenv "HOME" "/tmp"))) + (add-after 'install 'move-files + ;; Move utilities to bin output. + (lambda _ + (mkdir-p (string-append #$output:bin "/bin")) + (rename-file + (string-append #$output "/bin") + (string-append #$output:bin "/bin"))))) #:configure-flags #~(list "-DGDCM_BUILD_TESTING=true" (string-append "-DCMAKE_CTEST_ARGUMENTS=-E;" "'TestFileMetaInformation" "|TestElement2" "|TestSCUValidation" + "|gdcmscu-echo-dicomserver" + "|gdcmscu-find-dicomserver" "|TestEcho" "|TestFind'") + ;; Documentation "-DGDCM_DOCUMENTATION:BOOL=ON" "-DGDCM_PDF_DOCUMENTATION:BOOL=ON" (string-append "-DGDCM_INSTALL_DOC_DIR=" #$output:doc "/share/doc/" #$name) - "-DGDCM_BUILD_DOCBOOK_MANPAGES:BOOL=OFF"))) ; TODO: need ‘xsl-ns’ + "-DGDCM_BUILD_DOCBOOK_MANPAGES:BOOL=OFF" ;; TODO: need ‘xsl-ns’ + ;; Utilities + "-DGDCM_BUILD_APPLICATIONS:BOOL=ON"))) (native-inputs (list doxygen ghostscript graphviz texlive)) (home-page "https://gdcm.sourceforge.net/wiki/index.php/Main_Page") (synopsis "Grassroots DICOM library") -- 2.38.1