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Change-Id: I9f9fd24a9aa563f7c74154e613b85dee46bdcf79 --- gnu/packages/bioinformatics.scm | 39 +++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) base-commit: 2d19e505f6f9f82aebc9ba8c74ba223818acd9bc diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa6bce5591..514d01c87f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13159,6 +13159,45 @@ (define-public r-seqgl factors bound at the specific regions.") (license license:gpl2+))) +(define-public r-seraster + ;; There are no tags or releases. + (let ((commit "4fdc1ffe5d3feb65de9880329d221cf276b393a1") + (revision "1")) + (package + (name "r-seraster") + (version (git-version "0.99.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JEFworks-Lab/SEraster") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0y33lk8q0h9nfzmf7slxxvw3l0djassp4l63nsjpm3p6z4pah5s4")))) + (properties `((upstream-name . "SEraster"))) + (build-system r-build-system) + (propagated-inputs (list r-biocparallel + r-ggplot2 + r-matrix + r-rearrr + r-sf + r-spatialexperiment + r-summarizedexperiment)) + (home-page "https://github.com/JEFworks-Lab/SEraster") + (synopsis + "Rasterization framework for scalable spatial omics data analysis") + (description + "This package is a rasterization preprocessing framework that aggregates +cellular information into spatial pixels to reduce resource requirements for +spatial omics data analysis. SEraster reduces the number of points in spatial +omics datasets for downstream analysis through a process of rasterization where +single cells gene expression or cell-type labels are aggregated into equally +sized pixels based on a user-defined resolution. SEraster can be incorporated +with other packages to conduct downstream analyses for spatial omics datasets, +such as detecting spatially variable genes.") + (license license:gpl3)))) + (define-public emboss (package (name "emboss")