diff mbox series

[bug#65687] gnu: r-chromunity: Update to (git-version 0.0.2 revision commit).

Message ID 7271d3a14849828ed560847be5bb5635fe769a27.1693598614.git.navid.afkhami@mdc-berlin.de
State New
Headers show
Series [bug#65687] gnu: r-chromunity: Update to (git-version 0.0.2 revision commit). | expand

Commit Message

nafkhamdc Sept. 1, 2023, 8:03 p.m. UTC 
* gnu/packages/bioinformatics.scm (r-chromunity): Update to (git-version 0.0.2 revision commit).
[propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38.
---
 gnu/packages/bioinformatics.scm | 38 ++++++++++++++++-----------------
 1 file changed, 19 insertions(+), 19 deletions(-)


base-commit: a88da4199c30291a3155ff1b24b4b5ab3d7c40c0

Comments

Ricardo Wurmus Sept. 2, 2023, 9:03 a.m. UTC | #1 
Applied with minor changes:

- removed r-skitools because that’s no longer needed according to the
  importer.
- changed indentation.
- changed commit message to mention the effective version string

Thank you!
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2669942438..f1a0307d3b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9791,11 +9791,11 @@  (define-public r-skitools
       (license license:expat))))
 
 (define-public r-chromunity
-  (let ((commit "09fce8bc12cb84b45a6ea25bf8db6e5b75113d4f")
+  (let ((commit "712e56ccba64e8881dbb203546379a5c3c639bb2")
         (revision "1"))
     (package
       (name "r-chromunity")
-      (version (git-version "0.0.1" revision commit))
+      (version (git-version "0.0.2" revision commit))
       (source (origin
                 (method git-fetch)
                 (uri (git-reference
@@ -9804,25 +9804,25 @@  (define-public r-chromunity
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "0lp0h614k8fq6h9gpbylk4chh7q6w4qda8lx03ajrpppxmg7al2d"))))
+                  "0sdja11l7bg5rmcbp2cl226cq9qrj3r8kq5lg49zbin83hya27vh"))))
       (properties `((upstream-name . "chromunity")))
       (build-system r-build-system)
-      (propagated-inputs
-       (list r-arrow
-             r-biocgenerics
-             r-data-table
-             r-gchain
-             r-genomicranges
-             r-gutils
-             r-igraph
-             r-magrittr
-             r-mass
-             r-matrix
-             r-pbmcapply
-             r-plyr
-             r-r6
-             r-skitools
-             r-zoo))
+      (propagated-inputs (list r-arrow
+                               r-biocgenerics
+                               r-bsgenome-hsapiens-ucsc-hg38
+                               r-data-table
+                               r-gchain
+                               r-genomicranges
+                               r-gutils
+                               r-igraph
+                               r-magrittr
+                               r-mass
+                               r-matrix
+                               r-pbmcapply
+                               r-plyr
+                               r-r6
+                               r-skitools
+                               r-zoo))
       (home-page "https://github.com/mskilab/chromunity")
       (synopsis "Discovery of communities in Pore-C concatemers")
       (description "This is a package for the discovery of communities in