From patchwork Tue Jul 27 02:56:30 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Sarah Morgensen X-Patchwork-Id: 31613 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B54AE27BC78; Tue, 27 Jul 2021 03:57:20 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7EC5527BC6B for ; Tue, 27 Jul 2021 03:57:20 +0100 (BST) Received: from localhost ([::1]:34582 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1m8DHT-0004l3-FI for patchwork@mira.cbaines.net; Mon, 26 Jul 2021 22:57:19 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:50788) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1m8DHD-0004ko-73 for guix-patches@gnu.org; Mon, 26 Jul 2021 22:57:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:40365) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1m8DHC-0006By-Dw for guix-patches@gnu.org; Mon, 26 Jul 2021 22:57:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1m8DHC-0008P4-3k for guix-patches@gnu.org; Mon, 26 Jul 2021 22:57:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#49729] [PATCH core-updates 01/20] gnu: python-biom-format: Remove obsolete phase. Resent-From: Sarah Morgensen Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 27 Jul 2021 02:57:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 49729 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 49729@debbugs.gnu.org Received: via spool by 49729-submit@debbugs.gnu.org id=B49729.162735461732271 (code B ref 49729); Tue, 27 Jul 2021 02:57:02 +0000 Received: (at 49729) by debbugs.gnu.org; 27 Jul 2021 02:56:57 +0000 Received: from localhost ([127.0.0.1]:51908 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m8DH6-0008OM-TZ for submit@debbugs.gnu.org; Mon, 26 Jul 2021 22:56:57 -0400 Received: from out0.migadu.com ([94.23.1.103]:24045) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m8DH3-0008Nx-7S for 49729@debbugs.gnu.org; Mon, 26 Jul 2021 22:56:54 -0400 X-Report-Abuse: Please report any abuse attempt to abuse@migadu.com and include these headers. DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=mgsn.dev; s=key1; t=1627354611; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; bh=MoFNtwKk5/eQ5NQ/ZeDW0ePghf586hvK1P7ud8XINW0=; b=USyC9in1o4JWW4kg1RX9+rCLLsMdWFCIYSAf6iSW2rwFE+T5D+IdEw8EewBdKaHc4F30Z4 PFq3MiXltSx85hg6xDV1jVP5tSTYrbkItEN9h20oF+SprHFe50oZdQUAgFi35u2xaXrkI+ 68JY3GEKo0ZBfsdLPbtVyK19tWd5Ku0= From: Sarah Morgensen Date: Mon, 26 Jul 2021 19:56:30 -0700 Message-Id: <6c136dc582692dd6fcac4565b8f3d57ee5f6ce72.1627351168.git.iskarian@mgsn.dev> In-Reply-To: References: MIME-Version: 1.0 X-Migadu-Flow: FLOW_OUT X-Migadu-Auth-User: iskarian@mgsn.dev X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-biom-format)[arguments] <#:phases>: Remove 'make-files-writable phase. --- gnu/packages/bioinformatics.scm | 9 +-------- 1 file changed, 1 insertion(+), 8 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 002b417b54..aa9a1328f0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1012,14 +1012,7 @@ Python.") (("^(.+)def test_from_hdf5_issue_731" m indent) (string-append indent "@npt.dec.skipif(True, msg='Guix')\n" - m))) - #t)) - (add-before 'reset-gzip-timestamps 'make-files-writable - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (for-each (lambda (file) (chmod file #o644)) - (find-files out "\\.gz")) - #t)))))) + m)))))))) (propagated-inputs `(("python-numpy" ,python-numpy) ("python-scipy" ,python-scipy)