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Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 01 Sep 2023 20:46:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 65689 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 65689@debbugs.gnu.org Cc: Navid Afkhami X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.169360114517939 (code B ref -1); Fri, 01 Sep 2023 20:46:02 +0000 Received: (at submit) by debbugs.gnu.org; 1 Sep 2023 20:45:45 +0000 Received: from localhost ([127.0.0.1]:34168 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcB1V-0004eQ-GR for submit@debbugs.gnu.org; Fri, 01 Sep 2023 16:45:45 -0400 Received: from lists.gnu.org ([2001:470:142::17]:34066) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qcB1S-0004Lp-TA for submit@debbugs.gnu.org; Fri, 01 Sep 2023 16:45:43 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qcB1C-0005BX-T3 for guix-patches@gnu.org; Fri, 01 Sep 2023 16:45:27 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qcB19-0003vD-67 for guix-patches@gnu.org; Fri, 01 Sep 2023 16:45:26 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1693601117; x=1695415518; bh=XASeSBcassa27+4 oh+A7pJyHncy2j6b+HVvfHcvPXQ0=; b=XLEmTeeVDz4bWPuPJnernuoS09xUd6F l016nxVy68fkUJ2FRO/fy0eKgwkRhAYvPIHiVcfYDVvMn/pks9EM1AJboPaXeKaY A6IsxJ3uv8GUftSHUkhD0fbOIsi0R0Es7zRI8B5rqXVWwRqiHSkWwavAgBZzNbgy bHerD7PnknEc= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id A2B21300354 for ; Fri, 1 Sep 2023 22:45:17 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.32; Fri, 1 Sep 2023 22:45:16 +0200 From: Navid Afkhami Date: Fri, 1 Sep 2023 20:45:11 +0000 Message-ID: <646a45304d13b4544a475fc2ce490faee83496d8.1693601111.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27850.002 X-TM-AS-Result: No-10--3.431800-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiL/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYn6iaZxcTEhaFhGAWvOYxWonVTWWiNp+v9YL/tox9XQkf5rVOs2bw4Rli+ BaqMwTNoG6eIINck1G2bWF2dUri5rR0Ysv2aMEtnjpxdo/JwVm8oioCrSMgeK7rencS+jsJiYDT IhMw3OOX0tCKdnhB58I/9UW5M5dRNp7qEhmmPgy/cUt5lc1lLgKIzdZS3ou0UWVljWYeeB5NPFI IS4hq37AoSLV66Dlv/hHeom7DGPO8LQjclm06VXugulpzY8aJD2zolIuqe0epJtCPS9HfsnH5pv Nwjv4is1SFnvT3xtg/ZXoppoXJ2l3uIZI4JiTJYQPI4HwLeaEA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.431800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27850.002 X-TM-SNTS-SMTP: E57F4F21B63FF7643979C7E67470E4422EE67D79F64341CE6AF2D82E8A4B69992000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-strawr): New variable. --- gnu/packages/cran.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) base-commit: 7309da3ba64a191f074807275d8c5661a25c035c prerequisite-patch-id: 70b98dde8ca4056fb8bd1b731716853ac2c9f0a1 diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4ec6b802ff..adf2d4c32a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8287,6 +8287,28 @@ (define-public r-statsexpressions for ggstatsplot.") (license license:gpl3))) +(define-public r-strawr + (package + (name "r-strawr") + (version "0.0.91") + (source (origin + (method url-fetch) + (uri (cran-uri "strawr" version)) + (sha256 + (base32 + "1nbcn20g3f3f5x9sscj3020n5h4iaphr70s90n2fz31vc4snzq2m")))) + (properties `((upstream-name . "strawr"))) + (build-system r-build-system) + (inputs (list curl openssh openssl zlib)) + (propagated-inputs (list r-rcpp)) + (home-page "https://github.com/aidenlab/straw/tree/master/R") + (synopsis "Fast Implementation of Reading/Dump for .hic Files") + (description + "API for efficient .hic file data extraction with programmatic matrix access. +It doesn't store the pointer data for all the matrices, only theone +queried, and currently we are only supporting matrices.") + (license license:expat))) + (define-public r-stringdist (package (name "r-stringdist")