diff mbox series

[bug#66493] gnu: Add r-complexupset.

Message ID 618fa9f5d775960fae19fa60956f2d0729c321ab.1697114784.git.navid.afkhami@mdc-berlin.de
State New
Headers show
Series [bug#66493] gnu: Add r-complexupset. | expand

Commit Message

nafkhamdc Oct. 12, 2023, 12:46 p.m. UTC 
* gnu/packages/bioinformatics.scm (r-complexupset): New variable.
---
 gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)


base-commit: 1328c4cca531318e3ed90c6aecb522a5b22a4bcc

Comments

Ricardo Wurmus Oct. 12, 2023, 7:27 p.m. UTC | #1 
Thanks for the patch.  I applied a variant that takes the sources from
CRAN.
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cb0bdf766e..bd936cd1e3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -810,6 +810,34 @@  (define-public r-codeandroll2
 These functions are used by MarkdownReports, ggExpress, and SeuratUtils.")
       (license license:gpl3))))
 
+(define-public r-complexupset
+  (let ((commit "bb3f10a35eb2033754620aacdedc1d52357f13e4")
+        (revision "1"))
+    (package
+      (name "r-complexupset")
+      (version (git-version "1.3.5" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/krassowski/complex-upset")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1yid15515yhfzmbs8z991kk62hzdrlgbz6p81aj6csg3db0xy2xc"))))
+      (properties `((upstream-name . "ComplexUpset")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-colorspace r-ggplot2 r-patchwork r-scales))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/krassowski/complex-upset")
+      (synopsis "Create complex upset plots using 'ggplot2' components")
+      (description
+       "@code{UpSet} plots improve set overlap visualizations over Venn Diagrams.
+Striving to bring the best of the @code{UpSetR} and ggplot2', this
+package offers a way to create complex overlap visualisations,
+using simple and familiar tools.")
+      (license license:expat))))
+
 (define-public r-conospanel
   (let ((commit "39e76b201a783b4e92fd615010a735a61746fbb9")
         (revision "1"))