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Change-Id: I6f0afeeb41f667d780707af65034d5ba978f0d4a --- gnu/packages/bioconductor.scm | 50 +++++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 737d1ca2de..184972afb5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -22308,6 +22308,56 @@ (define-public r-basic4cseq and a multi-scale contact profile.") (license license:lgpl3))) +(define-public r-basics + (package + (name "r-basics") + (version "2.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BASiCS" version)) + (sha256 + (base32 "0kf215n151sxphc5w9h4i2xsk7lmysi4abwcpyz4slbwhpki3ac8")))) + (properties `((upstream-name . "BASiCS"))) + (build-system r-build-system) + (propagated-inputs + (list r-assertthat + r-biobase + r-biocgenerics + r-biocparallel + r-coda + r-cowplot + r-ggextra + r-ggplot2 + r-hexbin + r-mass + r-matrix + r-matrixstats + r-posterior + r-rcpp + r-rcpparmadillo + r-reshape2 + r-s4vectors + r-scran + r-scuttle + r-singlecellexperiment + r-summarizedexperiment + r-viridis)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/catavallejos/BASiCS") + (synopsis "Bayesian analysis of single-cell sequencing data") + (description + "@acronym{BASiCS, Bayesian analysis of single-cell sequencing data} is an +integrated Bayesian hierarchical model to perform statistical analyses of +single-cell RNA sequencing datasets in the context of supervised experiments +(where the groups of cells of interest are known a priori. BASiCS performs +built-in data normalisation (global scaling) and technical noise quantification +(based on spike-in genes). BASiCS provides an intuitive detection criterion for +highly (or lowly) variable genes within a single group of cells. Additionally, +BASiCS can compare gene expression patterns between two or more pre-specified +groups of cells.") + (license license:gpl3))) + (define-public r-basilisk-utils (package (name "r-basilisk-utils")