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Change-Id: I8fd06a18bd68f9a3baa2cc129d62aef06528bc97 --- gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 091cf98b5c..69adea13e5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7848,6 +7848,50 @@ (define-public r-r4rna with numerical methods for computing statistics for each.") (license license:gpl3))) +(define-public r-radiogx + (package + (name "r-radiogx") + (version "2.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "RadioGx" version)) + (sha256 + (base32 "18zqfnwjil4mv7fgh4wvnniyybmyqkg0hk2wc57rcn0mlppa3602")))) + (properties `((upstream-name . "RadioGx"))) + (build-system r-build-system) + (propagated-inputs + (list r-assertthat + r-biobase + r-biocgenerics + r-biocparallel + r-catools + r-coregx + r-data-table + r-downloader + r-magicaxis + r-matrixstats + r-rcolorbrewer + r-reshape2 + r-s4vectors + r-scales + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/RadioGx") + (synopsis "Analysis of large-scale radio-genomic data") + (description + "This package is a computational tool box for radio-genomic analysis which +integrates radio-response data, radio-biological modelling and comprehensive +cell line annotations for hundreds of cancer cell lines. The @code{RadioSet} +class enables creation and manipulation of standardized datasets including +information about cancer cells lines, radio-response assays and dose-response +indicators. Included methods allow fitting and plotting dose-response data +using established radio-biological models along with quality control to validate +results. Additional functions related to fitting and plotting dose response +curves, quantifying statistical correlation and calculating @acronym{AUC, area +under the curve} or @acronym{SF, survival fraction} are included.") + (license license:gpl3))) + (define-public r-raggedexperiment (package (name "r-raggedexperiment")