From patchwork Thu Apr 15 13:12:53 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Roel Janssen X-Patchwork-Id: 28573 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 75A5027BC77; Thu, 15 Apr 2021 14:14:23 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.9 required=5.0 tests=BAYES_00,MAILING_LIST_MULTI, RCVD_IN_MSPIKE_H4,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 4C6D927BC76 for ; Thu, 15 Apr 2021 14:14:22 +0100 (BST) Received: from localhost ([::1]:58624 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lX1p7-0008FP-G8 for patchwork@mira.cbaines.net; Thu, 15 Apr 2021 09:14:21 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:58750) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lX1op-0008Du-Jp for guix-patches@gnu.org; Thu, 15 Apr 2021 09:14:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:53417) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lX1oo-0007Zd-Sl for guix-patches@gnu.org; Thu, 15 Apr 2021 09:14:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lX1oo-0000C6-He for guix-patches@gnu.org; Thu, 15 Apr 2021 09:14:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#47796] [PATCH] gnu: Add python-mappy. Resent-From: Roel Janssen Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 15 Apr 2021 13:14:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 47796 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47796@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.1618492387659 (code B ref -1); Thu, 15 Apr 2021 13:14:02 +0000 Received: (at submit) by debbugs.gnu.org; 15 Apr 2021 13:13:07 +0000 Received: from localhost ([127.0.0.1]:36730 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lX1nq-0000AM-Bj for submit@debbugs.gnu.org; Thu, 15 Apr 2021 09:13:07 -0400 Received: from lists.gnu.org ([209.51.188.17]:57714) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lX1no-0000A3-94 for submit@debbugs.gnu.org; Thu, 15 Apr 2021 09:13:01 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:58356) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lX1no-0007AZ-2C for guix-patches@gnu.org; Thu, 15 Apr 2021 09:13:00 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:35276) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lX1nn-0006tY-Qo for guix-patches@gnu.org; Thu, 15 Apr 2021 09:12:59 -0400 Received: from [143.121.198.253] (port=55116) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_128_CBC_SHA1:128) (Exim 4.82) (envelope-from ) id 1lX1nn-0003XE-90 for guix-patches@gnu.org; Thu, 15 Apr 2021 09:12:59 -0400 From: Roel Janssen Message-ID: <2e1eb9cd-ee87-32fb-c720-b0824441f54e@gnu.org> Date: Thu, 15 Apr 2021 15:12:53 +0200 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:78.0) Gecko/20100101 Thunderbird/78.7.1 MIME-Version: 1.0 Content-Language: en-US X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches Hi Guix, Here's a patch for python-mappy. Cheers, Roel From d2df153a97eb326cbb72c556ffbd821877e9419a Mon Sep 17 00:00:00 2001 From: Roel Janssen Date: Thu, 15 Apr 2021 15:09:59 +0200 Subject: [PATCH] gnu: Add python-mappy. * gnu/packages/python-xyz.scm (python-mappy): New variable. --- gnu/packages/python-xyz.scm | 24 +++++++++++++++++++++++- 1 file changed, 23 insertions(+), 1 deletion(-) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 9d115790e1..5a4220541e 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -39,7 +39,7 @@ ;;; Copyright © 2017 Ben Sturmfels ;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe ;;; Copyright © 2017 José Miguel Sánchez García -;;; Copyright © 2017, 2020 Roel Janssen +;;; Copyright © 2017, 2020, 2021 Roel Janssen ;;; Copyright © 2017, 2018, 2019 Kei Kebreau ;;; Copyright © 2017 Rutger Helling ;;; Copyright © 2017 Muriithi Frederick Muriuki @@ -2020,6 +2020,28 @@ information created by most SVG editors. Optimization options are typically lossless but can be tweaked for more aggressive cleaning.") (license license:asl2.0))) +(define-public python-mappy + (package + (name "python-mappy") + (version "2.18") + (source (origin + (method url-fetch) + (uri (pypi-uri "mappy" version)) + (sha256 + (base32 + "1a05p7rkmxa6qhm108na8flzj2v45jab06drk59kzk1ip2sgvzqq")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/lh3/minimap2") + (synopsis "Python binding for minimap2") + (description "This package provides a convenient interface to minimap2, +a fast and accurate C program to align genomic and transcribe nucleotide +sequences.") + (license license:expat))) + (define-public python-mechanize (package (name "python-mechanize") -- 2.30.2