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Change-Id: I63d265470499affc8f0de94f88739c6631281a0d --- gnu/packages/cran.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) base-commit: 1615084a9a4115d48b75b3db048761e7534efc87 prerequisite-patch-id: 191a8394dbe6f865a9dc55bfc1b62e9dffc2180d prerequisite-patch-id: 3ddb7b281335b1bb4ced1e60a1f243a12a5cba2b diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 16a864be93..b0ccee37bb 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -31108,6 +31108,30 @@ (define-public r-tolerance Visualizations are also available for most of these settings.") (license license:gpl2+))) +(define-public r-topdom + (package + (name "r-topdom") + (version "0.10.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "TopDom" version)) + (sha256 + (base32 "1rryfnwvdlpdrjgs6sciy91cxfp4jykll0swclasydjvj4n642i6")))) + (properties `((upstream-name . "TopDom"))) + (build-system r-build-system) + (propagated-inputs (list r-ggplot2 r-matrixstats r-reshape2 r-tibble)) + (home-page "https://github.com/HenrikBengtsson/TopDom") + (synopsis "Efficient method for Identifying genomic topological domains") + (description + "This method identifies topological domains in genomes from Hi-C sequence data. +The authors published an implementation of their method as an R script. This package +originates from those original @code{TopDom} R scripts and provides help pages adopted +from the original @code{TopDom} PDF documentation. It also provides a small number of +bug fixes to the original code.") + ;; Either version of the GPL + (license (list license:gpl2 license:gpl3)))) + ;; Keep this in sync with the liblantern package. (define-public r-torch (package