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Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: laurent.gatto@gmail.com, rekado@elephly.net, zimon.toutoune@gmail.com, guix-patches@gnu.org Resent-Date: Wed, 30 Oct 2024 19:15:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 74119 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 74119@debbugs.gnu.org Cc: Navid Afkhami , Laurent Gatto , Ricardo Wurmus , Simon Tournier X-Debbugs-Original-To: X-Debbugs-Original-Xcc: Laurent Gatto , Ricardo Wurmus , Simon Tournier Received: via spool by submit@debbugs.gnu.org id=B.173031566821151 (code B ref -1); Wed, 30 Oct 2024 19:15:01 +0000 Received: (at submit) by debbugs.gnu.org; 30 Oct 2024 19:14:28 +0000 Received: from localhost ([127.0.0.1]:36923 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6E9D-0005V5-Kh for submit@debbugs.gnu.org; Wed, 30 Oct 2024 15:14:27 -0400 Received: from lists.gnu.org ([209.51.188.17]:32834) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t6E9C-0005Uz-1e for submit@debbugs.gnu.org; Wed, 30 Oct 2024 15:14:26 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t6E9A-0005kj-7E for guix-patches@gnu.org; Wed, 30 Oct 2024 15:14:25 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1t6E97-0008Ll-2I for guix-patches@gnu.org; Wed, 30 Oct 2024 15:14:23 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1730315656; x=1732130057; bh=0mYpU67hYxiTqxU ObDlUIateSx2VyUX5RtB2aqFaxaI=; b=N2Od1O8mNoREbRkKSZx1uHEQ4nATG6S d+9b8du6O4RbEl8WOOtwLYbGyt+Odvl17n4EAugBts0A5ChBS3F7uzNKlofSBvU4 N54xQ3RwILe3pBbEd9HfhJkQGl5hQZFdkn4t/MTzUYC99FcnnoYM5sjnwgFw2D8t 2G9bOuem1XV8= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 947F3160171 for ; Wed, 30 Oct 2024 20:14:16 +0100 (CET) Received: from localhost (141.80.121.92) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.11; Wed, 30 Oct 2024 20:14:16 +0100 From: Navid Afkhami Date: Wed, 30 Oct 2024 19:14:11 +0000 Message-ID: <259f53d23bedae94807b3cda8c3a6dcb4a6635a0.1730315651.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.43.0 MIME-Version: 1.0 X-Originating-IP: [141.80.121.92] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3223-9.1.2019-28764.001 X-TM-AS-Result: No-10--6.985900-5.000000 X-TMASE-MatchedRID: GQw6Xh/XS6UEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhboC GrShPd9QsVimw4sYAt4s4LTcXSYLRVpR8QrASBNuFm7cDHk2Crynngb1+20nTVtpNa0o3mGFd1C SkzHFQYhrEt25Uy/W8irO7EhDfsNiP/DKbN6W3Dnk+QJ4zu017ReMyzU2fkklVc6oxg15iGYRLj qoJJt/9bkluvFQnURkoli4ZoiOHT/uW6lJEClulrpcTKsMs1ZRlr7mIDvFeQ8fik2cUsCLroXD/ UDwx7GOs/SdtbWRIVttISHZqscWASzLD/bSyptDftwZ3X11IV0= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.985900-5.000000 X-TMASE-Version: SMEX-14.0.0.3223-9.1.2019-28764.001 X-TM-SNTS-SMTP: 36E77BBD1FA22A551C0F056B682D0B9B743DFB759003A833E7A1DFEE9441A2562000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-netid): New variable. Change-Id: Icf8fd23c6f24252350c783faa7f34f35eb1fbce2 --- gnu/packages/cran.scm | 44 +++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 44 insertions(+) base-commit: d6f775c30c6f47e174f6110d1089edc6315600e4 prerequisite-patch-id: 54292fa0b75533f02730e2da44993ad685d4a432 prerequisite-patch-id: 360575ef7e49c4e4e6b52644964df061856aee57 prerequisite-patch-id: 3904682af2961b8cb06ced06ab62c60604114dad prerequisite-patch-id: 0e861c88ccc360c3a1bcd0ce92d90a9aeb1455c0 prerequisite-patch-id: 7f33e70ef7fe15f3d03871cc3a0ab4dd2521a6dc diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1c2efc6b4c..f3b6fdc7ba 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -11906,6 +11906,50 @@ (define-public r-nestedcv of prediction methods available in @code{caret}.") (license license:expat))) +(define-public r-netid + (let ((commit "6ad1ffdd64a6584cc1d392524dad8e248d4590a8") + (revision "1")) + (package + (name "r-netid") + (version (git-version "0.1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/WWXkenmo/NetID_package") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1blm5ljql91xmbyxxwm3vw8iz8d4ir9gm7wfnapqhfdbjvg4l21q")))) + (properties `((upstream-name . "NetID"))) + (build-system r-build-system) + (propagated-inputs (list r-doparallel + r-dorng + r-glmnet + r-hmisc + r-igraph + r-irlba + r-lmtest + r-matrix + r-mclust + r-pracma + r-raceid + r-rarpack + r-reticulate + r-robustrankaggreg + r-rsvd + r-seurat)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/WWXkenmo/NetID_package") + (synopsis + "Scalable method to infer fate-specific networks from single-cell data") + (description + "This package provides a method to sample cells from single-cell data. +It also generates an aggregate profile on a pruned K-Nearest Neighbor graph. +This approach leads to an improved gene expression profile for quantifying +gene regulations.") + (license license:expat)))) + (define-public r-network (package (name "r-network")