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Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 11 Apr 2024 09:44:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 70336 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 70336@debbugs.gnu.org Cc: Vinicius Monego X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.171282859414770 (code B ref -1); Thu, 11 Apr 2024 09:44:01 +0000 Received: (at submit) by debbugs.gnu.org; 11 Apr 2024 09:43:14 +0000 Received: from localhost ([127.0.0.1]:54970 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ruqxd-0003qA-Js for submit@debbugs.gnu.org; Thu, 11 Apr 2024 05:43:14 -0400 Received: from lists.gnu.org ([2001:470:142::17]:34278) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1ruqxZ-0003oK-A5 for submit@debbugs.gnu.org; Thu, 11 Apr 2024 05:43:12 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ruqxI-0005f7-2u for guix-patches@gnu.org; Thu, 11 Apr 2024 05:42:52 -0400 Received: from mout01.posteo.de ([185.67.36.65]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1ruqxG-0002DV-1q for guix-patches@gnu.org; Thu, 11 Apr 2024 05:42:51 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id DE2CF240028 for ; Thu, 11 Apr 2024 11:42:43 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1712828563; bh=KPey4mlTzhuOa/uoP0P0dYBwX36hyIwgxUUdJOrQECo=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=nariMfNONaX7rrtoBi1yxhMKlkIc59I5T1FKXPB0MxDkC4svychqlfiCXCjn/30CV dGYMSRzAB+4iHtwVwlW3jASTmPf1u+36B4YBshPx9bTXQE2njKBRH1hQPzpHRqpEpK rdyMYnZsWdExJejOckx1vbBZEsjWSmotLzYK8lWqZPBcabAcl75RW0Ea5HzmFhaAo3 Q2ksyxrOCxHTSJP6Ye/CbFuseLqY2YZ+LhTCqc4F6g/9L0QLWhMTmKoJAQTtabC6bu O+k81A1JllW2Qiob14iHXEhBcdod05q6h+SBEPUXnNNvvUzC60NbYnzRcQPXGRapAW 1xaAF1KkorRUA== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4VFZVp5bzYz9rxB; Thu, 11 Apr 2024 11:42:42 +0200 (CEST) From: Vinicius Monego Date: Thu, 11 Apr 2024 09:42:08 +0000 Message-Id: <2044bf6af204b5384987458a22229cb0415a6a36.1712828385.git.monego@posteo.net> MIME-Version: 1.0 Received-SPF: pass client-ip=185.67.36.65; envelope-from=monego@posteo.net; helo=mout01.posteo.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (python-libensemble): New variable. Change-Id: I45d4ba209af746f22f3f6c74a01063726478de0f --- gnu/packages/maths.scm | 53 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 53 insertions(+) base-commit: 51de844a0ff6ea224367a384092896bce6848b9f diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 03760f3f3e..6f7e67329e 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -839,6 +839,59 @@ (define-public glpk-4 (base32 "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2")))))) +(define-public python-libensemble + (package + (name "python-libensemble") + (version "1.2.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "libensemble" version)) + (sha256 + (base32 "0y46b8rk3dnnjnap76l80cj3ddkjcic1vcl706cajac19vnk8vlk")))) + (build-system pyproject-build-system) + (native-inputs (list ncurses + python-mock + python-mpi4py + python-pytest + python-pytest-cov + python-pytest-timeout)) + (propagated-inputs (list python-numpy + python-psutil + python-pydantic-2 + python-pyyaml + python-tomli)) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'relax-psutil + (lambda _ + (substitute* "setup.py" + (("psutil>=5.9.4") "psutil>=5.9.2")))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; These files require MPI and call subprocesses. + (delete-file + "libensemble/tests/unit_tests/test_executor.py") + (delete-file + "libensemble/tests/unit_tests/test_executor_gpus.py") + ;; Run only unit tests, regression tests require MPI. + (setenv "TERM" "xterm") + ;; A very bad way to skip another MPI test. + (substitute* "libensemble/tests/run-tests.sh" + (("export UNIT_TEST_MPI_SUBDIR=.*") + "export UNIT_TEST_MPI_SUBDIR=''")) + ;; Run the test script. + (invoke "bash" "libensemble/tests/run-tests.sh" "-u"))))))) + (home-page "https://github.com/Libensemble/libensemble") + (synopsis "Toolkit for dynamic ensembles of calculations") + (description "@code{libensemble} is a a complete toolkit for dynamic +ensembles of calculations. It connects @code{deciders} to experiments or +simulations.") + (license license:bsd-3))) + (define-public linasm (package (name "linasm")