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[source]: Switch to git-fetch. [build-system]: Switch to pyproject-build-system. [inputs]: Add python-pybktree, python-scipy. [native-inputs]: Add python-setuptools, python-wheel. --- gnu/packages/bioinformatics.scm | 18 +++++++++++------- 1 file changed, 11 insertions(+), 7 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1215e67117..91ea4a5b7a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21424,24 +21424,28 @@ (define-public checkm (define-public umi-tools (package (name "umi-tools") - (version "1.0.0") + (version "1.1.6") (source (origin - (method url-fetch) - (uri (pypi-uri "umi_tools" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/CGATOxford/UMI-tools") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 - "08y3vz1vcx09whmbsn722lcs6jl9wyrh9i4p3k8j4cb1i32bij4a")))) - (build-system python-build-system) + (base32 "1liykfj4msvcgk8an5qq802jcxwlijqxrvijipqj1pwpxqzl9qnh")))) + (build-system pyproject-build-system) (inputs (list python-pandas python-future python-scipy python-matplotlib python-regex + python-pybktree + python-scipy python-pysam)) (native-inputs - (list python-cython)) + (list python-setuptools python-wheel)) (home-page "https://github.com/CGATOxford/UMI-tools") (synopsis "Tools for analyzing unique modular identifiers") (description "This package provides tools for dealing with @dfn{Unique