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[127.0.0.1]) by director2.derp.mail-out.ovh.net (inspect_sender_mail_agent) with SMTP for <77400@debbugs.gnu.org>; Mon, 31 Mar 2025 06:19:15 +0000 (UTC) Received: from mta11.priv.ovhmail-u1.ea.mail.ovh.net (unknown [10.108.9.3]) by director2.derp.mail-out.ovh.net (Postfix) with ESMTPS id 4ZR1Dg0PK4zyCF; Mon, 31 Mar 2025 06:19:15 +0000 (UTC) Received: from ngraves.fr (unknown [10.1.6.3]) by mta11.priv.ovhmail-u1.ea.mail.ovh.net (Postfix) with ESMTPSA id 9026F263937; Mon, 31 Mar 2025 06:19:14 +0000 (UTC) Authentication-Results: garm.ovh; auth=pass (GARM-114S008717726e7-7fe6-4ee0-abb7-5fb60826759c, 87830A87949A0BA70EB5F3889DD10BC79FDA47E2) smtp.auth=ngraves@ngraves.fr X-OVh-ClientIp: 90.92.117.144 Date: Mon, 31 Mar 2025 08:18:39 +0200 Message-ID: <20250331061901.22670-11-ngraves@ngraves.fr> X-Mailer: git-send-email 2.49.0 In-Reply-To: <20250331061901.22670-1-ngraves@ngraves.fr> References: <20250331061901.22670-1-ngraves@ngraves.fr> MIME-Version: 1.0 X-Ovh-Tracer-Id: 3738832119173669602 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgddujeeludekucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffojghfggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepvdehleeiffehtedvlefhffffjeefgfduhfetkeevheeiteduiedugfekuedtheejnecuffhomhgrihhnpehgihhthhhusgdrtghomhenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggeenucevlhhushhtvghrufhiiigvpedvnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedvpdhrtghpthhtohepjeejgedttdesuggvsggsuhhgshdrghhnuhdrohhrghdprhgtphhtthhopehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpoffvtefjohhsthepmhhoheeifegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=kBFe69qxbpEXaZesDtxWwlVsBU1Y6nmU9OjNuwYJH9Q=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1743401955; v=1; b=WkEClFz9kueKnpaZgBwq3LqndAOVeEgTZJc4/DUFbU+/F7NArl2RKK37Quxl3Oo0FfbO9WSv FBLNr47doojyHJL9RaDKcWtBE3J4GGVP8RIiq5aqyVH8SqLLAS1NAB+wR0I0d9Dw5dDgTecCKGp cb/S/aqMAdiOJHm2vF7og8PVryi7C+MJRGfVU8NuifPFQGl8rMNjwtduyYq6VGQakt/DktE9wqv 5cXiL3t7FteyXrcBXRTJ6NgHMyo7QL7rkIqgfZ1lmuJXcNqKv3pZxdFzfP10y0ochJ6GPbjqz+w gyjAMbLhFArJVCQLr0PnvvEbpdlkWIqP0PqCr7/u06yqA== X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: Nicolas Graves X-ACL-Warn: , Nicolas Graves via Guix-patches X-Patchwork-Original-From: Nicolas Graves via Guix-patches via From: Nicolas Graves Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.6-0.dee6ab9. --- gnu/packages/bioinformatics.scm | 44 ++++++++++++++++++--------------- 1 file changed, 24 insertions(+), 20 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1351a15529..00f0e10475 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12061,30 +12061,34 @@ (define-public seqan-1 ("bzip2" ,bzip2))))) (define-public seqmagick - (package - (name "seqmagick") - (version "0.8.4") - (source - (origin - (method url-fetch) - (uri (pypi-uri "seqmagick" version)) - (sha256 - (base32 - "0c6skyig8fyylnbj4597pjj9h0dn36rkxrhwd34yrsc6k6f7r8a0")))) - (build-system pyproject-build-system) - (inputs - (list python-biopython python-pygtrie)) - (native-inputs - (list python-pytest python-setuptools python-wheel)) - (home-page "https://github.com/fhcrc/seqmagick") - (synopsis "Tools for converting and modifying sequence files") - (description - "Bioinformaticians often have to convert sequence files between formats + (let ((commit "dee6ab9839cff317142e55678bb12c4c9ab2150f") + (revision "0")) + (package + (name "seqmagick") + (version (git-version "0.8.6" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/fhcrc/seqmagick") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0syipb7m44s5bqrhs17bwr28svy2s83j8d93kbazav92jzszzsw4")))) + (build-system pyproject-build-system) + (inputs + (list python-biopython python-pygtrie)) + (native-inputs + (list python-nose python-setuptools python-wheel)) + (home-page "https://github.com/fhcrc/seqmagick") + (synopsis "Tools for converting and modifying sequence files") + (description + "Bioinformaticians often have to convert sequence files between formats and do little manipulations on them, and it's not worth writing scripts for that. Seqmagick is a utility to expose the file format conversion in BioPython in a convenient way. Instead of having a big mess of scripts, there is one that takes arguments.") - (license license:gpl3))) + (license license:gpl3)))) (define-public seqtk (package