diff mbox series

[bug#68790,8/9] gnu: freesasa: Fix memerr tests.

Message ID 20240128230215.1389-8-david.elsing@posteo.net
State New
Headers show
Series Update rdkit and its dependencies | expand

Commit Message

David Elsing Jan. 28, 2024, 11:02 p.m. UTC 
* gnu/packages/chemistry.scm (freesasa)[arguments]: Add
"CFLAGS=-fno-builtin-malloc" to #:configure-flags.
---
 gnu/packages/chemistry.scm | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)
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Patch

diff --git a/gnu/packages/chemistry.scm b/gnu/packages/chemistry.scm
index 5e19bdf182..98141737ac 100644
--- a/gnu/packages/chemistry.scm
+++ b/gnu/packages/chemistry.scm
@@ -708,7 +708,12 @@  (define-public freesasa
       #~(list "--enable-check"
               "--enable-parser-generator"
               "CXXFLAGS=-std=c++17"
-              "--enable-doxygen")
+              "--enable-doxygen"
+              ;; Some tests rely on replacing malloc with a wrapper which
+              ;; fails in a controlled way, but this does not work if the call
+              ;; is replaced. This was fixed upstream, remove once there is a
+              ;; new release.
+              "CFLAGS=-fno-builtin-malloc")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'remove-libc++-linking