From patchwork Fri Jun 9 03:49:40 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 50781 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9FE3D27BBEB; Fri, 9 Jun 2023 04:51:44 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id AF0D4173E2 for ; Fri, 9 Jun 2023 04:51:43 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1q7T9W-0001Hj-4F; Thu, 08 Jun 2023 23:51:06 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q7T9V-0001H5-9Z for guix-patches@gnu.org; Thu, 08 Jun 2023 23:51:05 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1q7T9V-0006yw-0Q for guix-patches@gnu.org; Thu, 08 Jun 2023 23:51:05 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1q7T9U-0008IR-TH for guix-patches@gnu.org; Thu, 08 Jun 2023 23:51:04 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#63619] [PATCH v2 8/9] gnu: Add python-pytensor. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 09 Jun 2023 03:51:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 63619 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 63619@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 63619-submit@debbugs.gnu.org id=B63619.168628266131835 (code B ref 63619); Fri, 09 Jun 2023 03:51:04 +0000 Received: (at 63619) by debbugs.gnu.org; 9 Jun 2023 03:51:01 +0000 Received: from localhost ([127.0.0.1]:58028 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9R-0008HM-BO for submit@debbugs.gnu.org; Thu, 08 Jun 2023 23:51:01 -0400 Received: from mout01.posteo.de ([185.67.36.65]:51229) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q7T9P-0008Gp-P5 for 63619@debbugs.gnu.org; Thu, 08 Jun 2023 23:51:00 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 2BBB6240027 for <63619@debbugs.gnu.org>; Fri, 9 Jun 2023 05:50:54 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1686282654; bh=ZNt4suJqbirNTX+/7SAiQmpqs1ur+hGUVj75pLsjq/o=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=rbBNxE+fVEuxSmSALnclrWU8aJotzB9efpT15ITt6maBSO18dhUvlXzzpkY2r8Vla +FZw9PC2Oswo5MvwoO8gRec06UiCOAsosTgwruwWRTgKCAObO8YzxFoPA7D+JDfj/Q V2VmkPbHs/9M1Yb+IemlZnNN+KTNhiQh4ryEldRURQKIBgcPEtZW4fGHtxmJk9BeRG iOTeQMScuSZwz7dJxLYfsTbdTyTEzcSwotlHyfgyJrQzk4iNz7oIkGgGu0ZekmdYul Du6Xag2Azg4AJLP9FKxsG3ckiTcL78bJUlgmgbCwcKB03rBEtTRvKmWCweNBlpw6te /8Irp4PKhpZ1w== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QcnDY2FV9z6tvw; Fri, 9 Jun 2023 05:50:53 +0200 (CEST) From: Vinicius Monego Date: Fri, 9 Jun 2023 03:49:40 +0000 Message-Id: <20230609034941.1807600-8-monego@posteo.net> In-Reply-To: <20230609034941.1807600-1-monego@posteo.net> References: <20230609034941.1807600-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/python-science.scm (python-pytensor): New variable. --- gnu/packages/python-science.scm | 76 +++++++++++++++++++++++++++++++++ 1 file changed, 76 insertions(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index d076c877fc..fb2ea0c3b5 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -754,6 +754,82 @@ (define-public python-xarray-einstats functions and around einops with an API and features adapted to xarray.") (license license:asl2.0))) +(define-public python-pytensor + (package + (name "python-pytensor") + (version "2.12.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pymc-devs/pytensor") + (commit (string-append "rel-" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1yrzc6idbpvxs7xfmrpbnawz854yq73l7nc6yxdyg0l273ip3jsz")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + ;; Replace version manually because pytensor uses + ;; versioneer, which requires git metadata. + (add-after 'unpack 'versioneer + (lambda _ + (with-output-to-file "setup.cfg" + (lambda () + (display "\ +[versioneer] +VCS = git +style = pep440 +versionfile_source = pytensor/_version.py +versionfile_build = pytensor/_version.py +tag_prefix = +parentdir_prefix = pytensor- +"))) + (invoke "versioneer" "install") + (substitute* "setup.py" + (("versioneer.get_version\\(\\)") + (string-append "\"" #$version "\""))))) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; Test discovery fails, have to call pytest by hand. + ;; test_tensor_basic.py file requires JAX. + (invoke "python" "-m" "pytest" "-vv" + "--ignore" "tests/link/jax/test_tensor_basic.py" + ;; Skip benchmark tests. + "-k" (string-append + "not test_elemwise_speed" + " and not test_logsumexp_benchmark" + " and not test_fused_elemwise_benchmark" + " and not test_scan_multiple_output" + " and not test_vector_taps_benchmark" + " and not test_cython_performance") + ;; Skip computationally intensive tests. + "--ignore" "tests/scan/" + "--ignore" "tests/tensor/" + "--ignore" "tests/sandbox/" + "--ignore" "tests/sparse/sandbox/"))))))) + (native-inputs (list python-cython python-pytest python-versioneer)) + (propagated-inputs (list python-cons + python-etuples + python-filelock + python-logical-unification + python-minikanren + python-numba + python-numpy + python-scipy + python-typing-extensions)) + (home-page "https://pytensor.readthedocs.io/en/latest/") + (synopsis + "Library for mathematical expressions in multi-dimensional arrays") + (description + "PyTensor is a Python library that allows one to define, +optimize, and efficiently evaluate mathematical expressions involving +multi-dimensional arrays. It is a fork of the Aesara library.") + (license license:bsd-3))) + (define-public python-msgpack-numpy (package (name "python-msgpack-numpy")