From patchwork Sat May 20 23:12:41 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Vinicius Monego X-Patchwork-Id: 50190 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 5EB0F27BBEA; Sun, 21 May 2023 00:15:26 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id C146627BBE2 for ; Sun, 21 May 2023 00:15:25 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1q0Vn9-0008Bu-LU; Sat, 20 May 2023 19:15:16 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1q0Vmx-0008AS-1R for guix-patches@gnu.org; Sat, 20 May 2023 19:15:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1q0Vmw-0002kB-PG for guix-patches@gnu.org; Sat, 20 May 2023 19:15:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1q0Vmw-0000cr-KD for guix-patches@gnu.org; Sat, 20 May 2023 19:15:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#63619] [PATCH 9/9] gnu: Add python-pymc. Resent-From: Vinicius Monego Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 20 May 2023 23:15:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 63619 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 63619@debbugs.gnu.org Cc: Vinicius Monego Received: via spool by 63619-submit@debbugs.gnu.org id=B63619.16846244572230 (code B ref 63619); Sat, 20 May 2023 23:15:02 +0000 Received: (at 63619) by debbugs.gnu.org; 20 May 2023 23:14:17 +0000 Received: from localhost ([127.0.0.1]:59577 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VmC-0000Zu-Pi for submit@debbugs.gnu.org; Sat, 20 May 2023 19:14:17 -0400 Received: from mout01.posteo.de ([185.67.36.65]:36375) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1q0VmA-0000Za-Cq for 63619@debbugs.gnu.org; Sat, 20 May 2023 19:14:14 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id DC7E3240027 for <63619@debbugs.gnu.org>; Sun, 21 May 2023 01:14:08 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624448; bh=3SiXQeUS64hez9/PvwjBy8GsmNvW9gdwrL8AoR33znQ=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=NVshdcVcBH9S/sH58X39x8hYtosD/g61/dGYd0n9hnc3RYqIzkLLAa05zytf0NykS /PN6bBASYZP/tMlPjIf0M1N6KDG9Y1NYBAaHTSWCYaHqDU3MeoQpgBIzEtD6+yCeAE 0HodhyIcZuCWoj5xxeYpPGBNBe+1E/xgINhA3aRzWtXsWC5K8+DTlevX1IebX1aAIk LrIQ0Hbe1B8JT9X0VsHjWWTrqXBzBthgHOsnS+qIE49/8/ovIjr/Ossv7wPNQB4ZCO ntTUPn4P8FX1IDIXwOwQvW58y3gjOf9kiiJi0wC0PZ7tT+2x70jkvfmsMxHuNK6xWX bff6Dq+TKKk7Q== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzzz0dGwz6tx1; Sun, 21 May 2023 01:14:06 +0200 (CEST) From: Vinicius Monego Date: Sat, 20 May 2023 23:12:41 +0000 Message-Id: <20230520231241.962799-9-monego@posteo.net> In-Reply-To: <20230520231241.962799-1-monego@posteo.net> References: <20230520231241.962799-1-monego@posteo.net> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/statistics.scm (python-pymc): New variable. --- gnu/packages/statistics.scm | 40 +++++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c39cf9c0ac..4aac3369ad 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -2192,6 +2192,46 @@ (define-public python-arviz comparison and diagnostics.") (license license:asl2.0))) +(define-public python-pymc + (package + (name "python-pymc") + (version "5.3.1") + (source (origin + (method git-fetch) ; no tests in PyPI + (uri (git-reference + (url "https://github.com/pymc-devs/pymc") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1295b0d1zgnpy2hgm0i9jhnnqgzkya7cwcyhq45fdrz65mi9b65h")))) + (build-system pyproject-build-system) + (arguments + ;; Tests are computationally intensive and around 130 tests out of ~2800 + ;; fail due to a missing .cc file in PyTensor. + (list #:tests? #f + #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'write-permissions + (lambda _ + (setenv "HOME" "/tmp")))))) + (native-inputs (list python-pytest-cov)) + (propagated-inputs (list python-arviz + python-cachetools + python-cloudpickle + python-fastprogress + python-numpy + python-pandas + python-pytensor + python-scipy + python-typing-extensions)) + (home-page "https://github.com/pymc-devs/pymc") + (synopsis "Library for probabilistic programming in Python") + (description + "PyMC (formerly PyMC3) is a Python package for Bayesian +statistical modeling focusing on advanced Markov chain Monte Carlo (MCMC) and +variational inference (VI) algorithms.") + (license license:asl2.0))) + (define-public python-patsy (package (name "python-patsy")