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(license license:bsd-3))) +(define-public python-mgatk + (package + (name "python-mgatk") + (version "0.6.7") + (source + (origin + (method url-fetch) + (uri (pypi-uri "mgatk" version)) + (sha256 + (base32 "0bxxk3v8lmqcdnm97468p7p3kzb59i5bpgayx7kqzl2p8lfwzi9h")))) + (build-system pyproject-build-system) + (arguments + (list #:tests? #f)) ; There are no tests in the pypi archive. + (propagated-inputs + (list python-biopython + python-click + python-numpy + python-optparse-pretty + python-pandas + python-pysam + python-regex + python-ruamel.yaml + snakemake)) + (native-inputs + (list python-pytest)) + (home-page "https://github.com/caleblareau/mgatk") + (synopsis "Mitochondrial genome analysis toolkit.") + (description "This package is a python-based command line interface for +processing .bam files with mitochondrial reads and generating high-quality +heteroplasmy estimation from sequencing data. The mgatk package places a +special emphasis on mitochondrial genotypes generated from single-cell genomics +data, primarily @acronym{mtscATAC-seq, mitochondrial single-cell ATAC-sequence}, +but is generally applicable across other assays.") + (license license:expat))) + (define-public python-multivelo (package (name "python-multivelo")