From patchwork Thu May 11 16:30:16 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 49939 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B81B627BBEE; Thu, 11 May 2023 17:31:30 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-3.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 4DDA027BBF0 for ; Thu, 11 May 2023 17:31:28 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1px9CL-0005lA-EU; Thu, 11 May 2023 12:31:21 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1px9C9-0005kf-4q for guix-patches@gnu.org; Thu, 11 May 2023 12:31:09 -0400 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1px9C2-0005V9-I9 for guix-patches@gnu.org; Thu, 11 May 2023 12:31:07 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1px9C2-00063V-3E; Thu, 11 May 2023 12:31:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#63447] [PATCH] gnu: Add r-dropletutils. 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(license license:gpl3+))) +(define-public r-dropletutils + (package + (name "r-dropletutils") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "DropletUtils" version)) + (sha256 + (base32 "09xwfb4ihpsp465vb1zbcwm6ww6qi3spn9d8p4i1gczyc0p9pf1y")))) + (properties `((upstream-name . "DropletUtils"))) + (build-system r-build-system) + (propagated-inputs + (list r-beachmat + r-bh + r-biocgenerics + r-biocparallel + r-delayedarray + r-delayedmatrixstats + r-dqrng + r-edger + r-genomicranges + r-hdf5array + r-iranges + r-matrix + r-r-utils + r-rcpp + r-rhdf5 + r-rhdf5lib + r-s4vectors + r-scuttle + r-singlecellexperiment + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/DropletUtils") + (synopsis "Utilities for handling single-cell droplet data") + (description + "This package provides a number of utility functions for handling +single-cell (RNA-seq) data from droplet technologies such as 10X Genomics. +This includes data loading from count matrices or molecule information files, +identification of cells from empty droplets, removal of barcode-swapped pseudo- +cells, and downsampling of the count matrix.") + (license license:gpl3))) + (define-public r-dss (package (name "r-dss")