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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-multibac): New variable. --- gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) base-commit: 7a0a186a32524d4156bf96786d708fab323cebff diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 768b55b25e..299d772bd2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10101,6 +10101,37 @@ (define-public r-mbkmeans large datasets, including support for on-disk data representation.") (license license:expat))) +(define-public r-multibac + (package + (name "r-multibac") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MultiBaC" version)) + (sha256 + (base32 "1qwf1mvw81hb929xpnx5x910f7qnax9lkylhwzcdw1814s4zj25i")))) + (properties `((upstream-name . "MultiBaC"))) + (build-system r-build-system) + (propagated-inputs + (list r-ggplot2 + r-matrix + r-multiassayexperiment + r-pcamethods + r-plotrix + r-ropls)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/MultiBaC") + (synopsis "Multiomic batch effect correction") + (description + "MultiBaC is a strategy to correct batch effects from multiomic datasets +distributed across different labs or data acquisition events. This package is +the first batch effect correction algorithm that dealing with batch effect +correction in multiomics datasets. MultiBaC is able to remove batch effects +across different omics generated within separate batches provided that at least +one common omic data type is included in all the batches considered.") + (license license:gpl3))) + (define-public r-multtest (package (name "r-multtest")