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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 21 Apr 2023 08:18:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62978 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <62978@debbugs.gnu.org> Received: via spool by 62978-submit@debbugs.gnu.org id=B62978.16820650401263 (code B ref 62978); Fri, 21 Apr 2023 08:18:03 +0000 Received: (at 62978) by debbugs.gnu.org; 21 Apr 2023 08:17:20 +0000 Received: from localhost ([127.0.0.1]:39204 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pplxI-0000KI-5e for submit@debbugs.gnu.org; Fri, 21 Apr 2023 04:17:20 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:50285) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pplx6-0000It-1w for 62978@debbugs.gnu.org; Fri, 21 Apr 2023 04:17:10 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1682065022; x=1683879423; bh=WG7RJg04W96Mg7I2fyiixgXCokVI++IXWdVhw1wHOR8=; b=oNi4YHTgTRzS QUl44nQmxgZy2hSnifxaIXcgjS/LOlkZdy95fk/CXROnXYBQevmvvwVOOZ3MnHIP enNGJGJqhYUIxrOSKuqbstZs/FDF43XOynVXjEYDnFSydC8Y2rpHRKPMVHabqE82 jaPXlTQCLV+9IfawCAxsZOtDxWQN3UE= Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=141.80.113.62; helo=sw-it-p-ex4.mdc-berlin.net; envelope-from=madalinionel.patrascu@mdc-berlin.de; receiver= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id F184616014E for <62978@debbugs.gnu.org>; Fri, 21 Apr 2023 10:17:01 +0200 (CEST) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Fri, 21 Apr 2023 10:16:58 +0200 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Fri, 21 Apr 2023 10:16:40 +0200 Message-ID: <20230421081641.18388-5-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230421081641.18388-1-madalinionel.patrascu@mdc-berlin.de> References: <20230421081641.18388-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27578.006 X-TM-AS-Result: No-10--7.601400-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfN6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VNnf JrUSEbFD5U2NzhfTq9zuNT8xdcEnQwE+dA3RWUSvnVTWWiNp+v/KIqAq0jIHihPiIPO2d8g5Uex gNDoxdJZ67OLuIAmsavAZSzjX62drJnckDi37jO7TfU1/F+PbM2yiYnmnxjh8U72YOAMDJjieAi CmPx4NwBnUJ0Ek6yhjxEHRux+uk8hfNjF5BHUO+zILdKULpe6ayMq2D6cFuEhqaIzZRKSQtVVoH SPuzHq4SS/2ITVqjcI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.601400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27578.006 X-TM-SNTS-SMTP: 02E44AE5C08AC59476F0EF7597B3FAF8119BD14228629B15AD23A423626F49842002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (bpp-phyl-omics): New variable. --- gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 576af31ae6..511431fb95 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2267,6 +2267,34 @@ (define-public bpp-phyl library provides phylogenetics-related modules.") (license license:cecill-c))) +(define-public bpp-phyl-omics + (package + (name "bpp-phyl-omics") + (version "2.4.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BioPP/bpp-phyl-omics") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "172psb8njkjwg3cd6gdy5w0mq8f0817v635yw4bk7146aggjzl1h")))) + (build-system cmake-build-system) + (arguments + (list #:tests? #f)) ; No test provided. + (inputs + (list bpp-core + bpp-phyl + bpp-seq + bpp-seq-omics)) + (home-page "https://github.com/BioPP/bpp-phyl-omics") + (synopsis "Bio++ phylogenetic library genomics components") + (description + "This library contains the genomics components of the Bio++ phylogenetics +library. It is part of the Bio++ project.") + (license license:cecill))) + (define-public bpp-popgen ;; The last release was in 2014 and the recommended way to install from source ;; is to clone the git repository, so we do this.