@@ -6046,6 +6046,41 @@ (define-public macs
sequencing tag position and orientation.")
(license license:bsd-3)))
+(define-public maffilter
+ (package
+ (name "maffilter")
+ (version "1.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/jydu/maffilter/archive/v"
+ version ".tar.gz"))
+ (sha256
+ (base32 "0xgbadjad54hjdh743qszyv4yvdpi45519h6cj6sfgybsr93385l"))))
+ (build-system cmake-build-system)
+ (arguments
+ (list #:tests? #f)) ;; No tests provided
+ (inputs
+ (list bpp-core
+ bpp-phyl
+ bpp-phyl-omics
+ bpp-seq
+ bpp-seq-omics
+ boost
+ zlib))
+ (home-page "https://jydu.github.io/maffilter/")
+ (synopsis "Multiple alignment format file processor")
+ (description
+ "MafFilter is a program dedicated to the analysis of genome alignments. It
+parses and manipulates @acronym{MAF, multiple alignment format} files as well as
+more simple fasta files. This package can be used to design a pipeline as a
+series of consecutive filters, each performing a dedicated analysis. Many of
+the filters are available, from alignment cleaning to phylogeny reconstruction
+and population genetics analysis. Despite various filtering options and format
+conversion tools, MafFilter can compute a wide range of statistics (phylogenetic
+trees, nucleotide diversity, inferrence of selection, etc.).")
+ (license license:gpl3)))
+
(define-public mafft
(package
(name "mafft")