diff mbox series

[bug#62882] gnu: Add r-demultiplex2.

Message ID 20230416102812.60375-1-navid.afkhami@mdc-berlin.de
State New
Headers show
Series [bug#62882] gnu: Add r-demultiplex2. | expand

Commit Message

nafkhamdc April 16, 2023, 10:28 a.m. UTC 
* gnu/packages/bioinformatics.scm (r-demultiplex2): New variable.
---
 gnu/packages/bioinformatics.scm | 41 +++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

Comments

Ricardo Wurmus April 17, 2023, 9:20 a.m. UTC | #1 
Applied, thanks!
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b5442dd0ad..1919866731 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9662,6 +9662,47 @@  (define-public r-demuxmix
 rates can be estimated, and methods for quality control are provided.")
       (license license:artistic2.0))))
 
+(define-public r-demultiplex2
+  (let ((commit "e42bc8310c0ea035af100e6ccea59b46ad6385f5")
+        (revision "1"))
+    (package
+      (name "r-demultiplex2")
+      (version (git-version "1.0.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/Gartner-Lab/deMULTIplex2")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "15f3kshsdvm97w24ql9b1wjlfbabimdsam0482hg7jivlvpl8j9w"))))
+      (properties `((upstream-name . "deMULTIplex2")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-data-table
+                               r-devtools
+                               r-dplyr
+                               r-ggextra
+                               r-ggplot2
+                               r-gridextra
+                               r-magrittr
+                               r-mass
+                               r-matrix
+                               r-rcolorbrewer
+                               r-shortread
+                               r-stringdist
+                               r-tidyr
+                               r-uwot
+                               r-viridis
+                               r-xvector))
+      (home-page "https://github.com/Gartner-Lab/deMULTIplex2")
+      (synopsis "Robust sample demultiplexing for scRNA-seq")
+      (description
+       "Bioinformatics algorithm for demultiplexing multiplexed single cell datasets.
+It is built on a statistical model of tag read counts derived from
+the physical mechanism of tag cross-contamination.")
+      (license license:cc0))))
+
 (define-public r-demultiplex
   (let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299")
         (revision "1"))