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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 24 Mar 2023 23:20:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62428 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <62428@debbugs.gnu.org> Received: via spool by 62428-submit@debbugs.gnu.org id=B62428.167969997722175 (code B ref 62428); Fri, 24 Mar 2023 23:20:03 +0000 Received: (at 62428) by debbugs.gnu.org; 24 Mar 2023 23:19:37 +0000 Received: from localhost ([127.0.0.1]:41662 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqh7-0005lX-JM for submit@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:37 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:57329) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqgq-0005jQ-JT for 62428@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:22 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679699954; x=1681514355; bh=nf70d9vCEAWj2gwaOpHDT+qRauHCZdNL0v1kdZRiuss=; b=A8q2tsMfky2v FMfPKFFygPAV929cjN5HBaKG8bqsP0UPWh+Ga+nX1tx6Io2RluaawXcrPK1HcNkp kVBvWNDW5J6BOr0dtH4d4GDvzF/GNHUQZYJbMRPeVPtSNYwgMg5dSbWTCx9PKDEv S/l0/RMokmb4ulvYmSyDeioCttwylNo= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 8C36830018D for <62428@debbugs.gnu.org>; Sat, 25 Mar 2023 00:19:14 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 00:19:11 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 25 Mar 2023 00:18:51 +0100 Message-ID: <20230324231900.28367-5-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de> References: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-AS-Result: No-10--1.158400-5.000000 X-TMASE-MatchedRID: toN6SH028bX/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkELI5 /dPWFNfzRRa406V/YwyBUGewL2YXt8i5BCxh8k4DwLYk+NSxc5r4qCLIu0mtIPPlAor2K6GjmA0 yITMNzjl9LQinZ4QefCP/VFuTOXUTae6hIZpj4Mv3FLeZXNZS4CiM3WUt6LtFxZNFioJyRwIak6 XSr0vmNytcJiiFSX+h7LR8o9gyKs+36Q0ry+c9FZM8+496nWoci9fDe9jp4aCujf9ZG3IYiuGQ4 V+vGKrnWSgmpbFZnEI1kD2KtSTmq2Pbt5Stv2K5/Ox0TU9Ci5I= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.158400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-SNTS-SMTP: DC62EA9B71D0FA5384704EB5C0AC4B81EB5778F2C9F776152DFF95878E01FDF42002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-org-sc-sgd-db): New variable. --- gnu/packages/bioconductor.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3ae0dba919..21aa3476c0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -116,6 +116,27 @@ (define-public r-org-bt-eg-db based on mapping using Entrez Gene identifiers.") (license license:artistic2.0))) +(define-public r-org-sc-sgd-db + (package + (name "r-org-sc-sgd-db") + (version "3.16.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "org.Sc.sgd.db" version + 'annotation)) + (sha256 + (base32 "03b8m4p865kzhjj8zyhmc0ic0n4jyjdl4h8a8xny10b7xs6l0v9f")))) + (properties `((upstream-name . "org.Sc.sgd.db"))) + (build-system r-build-system) + (propagated-inputs (list r-annotationdbi)) + (home-page "https://bioconductor.org/packages/org.Sc.sgd.db") + (synopsis "Genome wide annotation for Yeast") + (description + "Genome wide annotation for Yeast, primarily based on mapping using ORF +identifiers from @acronym{SGD, Saccharomyces Genome Database}.") + (license license:artistic2.0))) + (define-public r-pd-mapping50k-xba240 (package (name "r-pd-mapping50k-xba240")