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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 24 Mar 2023 23:20:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62428 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <62428@debbugs.gnu.org> Received: via spool by 62428-submit@debbugs.gnu.org id=B62428.167969997722169 (code B ref 62428); Fri, 24 Mar 2023 23:20:03 +0000 Received: (at 62428) by debbugs.gnu.org; 24 Mar 2023 23:19:37 +0000 Received: from localhost ([127.0.0.1]:41660 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqh7-0005lT-8M for submit@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:37 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:53385) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqgq-0005jL-JP for 62428@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:22 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679699953; x=1681514354; bh=fT/IP6SUdlhubV7MYpVcfcjYz93/M00yNla37OGKLNU=; b=XeSagMK7mleN d1LNH0y9JOAEmw/5uHY63byzq9P260QqvPVDc941eicYqtRJQ+iNPo6Q8PYfkWV8 vzmu7oWxJ9g9s8BAnKTNL21Ggm2ugaht/YDN929CI8HkSmewGdl1dzVW5odyO6Jd fEQnYjD0Lch/UOfLnEvd7IgxRC1iTC4= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 07E14300124 for <62428@debbugs.gnu.org>; Sat, 25 Mar 2023 00:19:12 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 00:19:11 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 25 Mar 2023 00:18:49 +0100 Message-ID: <20230324231900.28367-3-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de> References: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-AS-Result: No-10--8.986600-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIsD mFQEq0bLRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v8XjfR3d0weRqfMsy2bxlLv52/ 4Ak+0YK9gYGRmZe/Y+yEmqTfXa4IG25Xh6o1JmN87lKkz03w06+uLFZZYlisfHxPMjOKY7A8Lbi gRnpKlKTpcQTtiHDgWwCaCpZCqUcISz66hnNxSIiNGiaV/yFEEITVtlcPR/glWfxhTlCdaPQ== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.986600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-SNTS-SMTP: 0B508CB8FEEAD6F11E0CD4157CEB03D8FB5138BCC90945482FFDF3DD58CCED912002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-hybridmtest): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 37b649a7d6..c58613bea3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -16248,6 +16248,36 @@ (define-public r-rsbml validating output, provides an S4 SBML DOM, converts SBML to R graph objects.") (license license:artistic2.0))) +(define-public r-hybridmtest + (package + (name "r-hybridmtest") + (version "1.42.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "HybridMTest" version)) + (sha256 + (base32 "0mv092lq8548l306ghgvh8yka1fnyvs7w1yzfjzcchj8vlsb0qns")))) + (properties `((upstream-name . "HybridMTest"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-fdrtool + r-mass + r-survival)) + (home-page "https://bioconductor.org/packages/HybridMTest") + (synopsis "Hybrid multiple testing") + (description + "This package performs hybrid multiple testing that incorporates method +selection and assumption evaluations into the analysis using @acronym{EBP, +empirical Bayes probability} estimates obtained by Grenander density estimation. +For instance, for 3-group comparison analysis, Hybrid Multiple testing considers +EBPs as weighted EBPs between F-test and H-test with EBPs from Shapiro Wilk test +of normality as weigth. Instead of just using EBPs from F-test only or using H- +test only, this methodology combines both types of EBPs through EBPs from Shapiro +Wilk test of normality. This methodology uses then the law of total EBPs.") + (license license:gpl2+))) + (define-public r-hypergraph (package (name "r-hypergraph")