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Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 24 Mar 2023 23:20:07 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 62428 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <62428@debbugs.gnu.org> Received: via spool by 62428-submit@debbugs.gnu.org id=B62428.167969998022237 (code B ref 62428); Fri, 24 Mar 2023 23:20:07 +0000 Received: (at 62428) by debbugs.gnu.org; 24 Mar 2023 23:19:40 +0000 Received: from localhost ([127.0.0.1]:41678 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqhA-0005mU-Dd for submit@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:40 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:55909) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pfqgx-0005k4-Rc for 62428@debbugs.gnu.org; Fri, 24 Mar 2023 19:19:29 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1679699959; x=1681514360; bh=uwmw+G5iWXE4KdKFMj79uywLHjdincbMT4gg1qislE8=; b=G9LEepANSeCR Ypr4tW6grGWnd/6T87oW7tMR0lm9E2dyNxmgZfX9NTaI3ci+QdRYxZqGxbqmTplq emP9yxjyx7FGBS4DKUaViNkxTu840qv8BHxrQcj2JlYHEV8qPaz6MsmpN8de1Epg uMCScmvD2DIAFklxs02aXxBXn7jnq7U= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 1FAD13001C1 for <62428@debbugs.gnu.org>; Sat, 25 Mar 2023 00:19:19 +0100 (CET) Received: from pimi-TRX40-AORUS-PRO-WIFI.lan (77.23.232.54) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.23; Sat, 25 Mar 2023 00:19:13 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Sat, 25 Mar 2023 00:18:59 +0100 Message-ID: <20230324231900.28367-13-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.2 In-Reply-To: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de> References: <20230324231900.28367-1-madalinionel.patrascu@mdc-berlin.de> MIME-Version: 1.0 X-Originating-IP: [77.23.232.54] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-AS-Result: No-10--2.238000-5.000000 X-TMASE-MatchedRID: 54gb2yeIOXT/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOjEIt+uIPPOAbo TDS3zulAcjTcMkuJPYkZijt1cgK90C/33TWoSUH6rIGj0lq6L0ahHrZE2+S866Y5ZGw7wyeHEpM Y0o/BrKdyQB4UAGIVrzgELkIsyIqM0N7DjAdxZNTi8zVgXoAltsIJ+4gwXrEtwrbXMGDYqV+i5u /VvsFaHR8XkxC85xWeJY6AKHAFL88yiOD9xnnZjT5/EAmAmUoaXxkIOPs/mxH9WYIiq13f/x88F JLWCwbOvNj0INejLTzinpP+yXTbVShCDgyssE8uo3yYJV8x0OrMUVc0s17dsX/q4TD2v7K1 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.238000-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27524.003 X-TM-SNTS-SMTP: D5FBD11E844786B796B39C8CEC7464734CA73E13D4FF979A987272DDC2AE17742002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-beadarray): New variable. --- gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e7ab9c983c..6c114efd21 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -17943,6 +17943,40 @@ (define-public r-beachmat matrices.") (license license:gpl3))) +(define-public r-beadarray + (package + (name "r-beadarray") + (version "2.48.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "beadarray" version)) + (sha256 + (base32 "0fr24gj6h2rr1r4l3n8myjaihjqi5yinwdsxqa5ih8m3v72dlrby")))) + (properties `((upstream-name . "beadarray"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-beaddatapackr + r-biobase + r-biocgenerics + r-genomicranges + r-ggplot2 + r-hexbin + r-illuminaio + r-iranges + r-limma + r-reshape2)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/beadarray") + (synopsis + "Quality assessment and low-level analysis for Illumina BeadArray data") + (description + "The package is able to read bead-level data (raw TIFFs and text files) +output by BeadScan as well as bead-summary data from BeadStudio. Methods for +quality assessment and low-level analysis are provided.") + (license license:expat))) + (define-public r-beadarraysnp (package (name "r-beadarraysnp")