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(license license:gpl3))) +(define-public r-anota2seq + (package + (name "r-anota2seq") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "anota2seq" version)) + (sha256 + (base32 "14ggggfa6mdqcb2hfvann9mb66s7a9nxlnh31zblb3mrrjizg1x3")))) + (properties `((upstream-name . "anota2seq"))) + (build-system r-build-system) + (propagated-inputs + (list r-deseq2 + r-edger + r-limma + r-multtest + r-qvalue + r-rcolorbrewer + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/anota2seq") + (synopsis "Transcriptome-wide analysis of translational efficiency") + (description + "The anota2seq package provides analysis of translational efficiency and +differential expression analysis for polysome-profiling and ribosome-profiling +studies (two or more sample classes) quantified by RNA sequencing or +DNA-microarray. Polysome-profiling and ribosome-profiling typically generate +data for two RNA sources, translated mRNA and total mRNA. Analysis of +differential expression is used to estimate changes within each RNA source. +Analysis of translational efficiency aims to identify changes in translation +efficiency leading to altered protein levels that are independent of total mRNA +levels or buffering, a mechanism regulating translational efficiency so that +protein levels remain constant despite fluctuating total mRNA levels.") + (license license:gpl3))) + (define-public r-sigpathway (package (name "r-sigpathway")