@@ -2704,6 +2704,59 @@ (define-public r-animalcules
to understand their data better and discover new insights.")
(license license:artistic2.0)))
+(define-public r-annotationhubdata
+ (package
+ (name "r-annotationhubdata")
+ (version "1.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationHubData" version))
+ (sha256
+ (base32 "0mcx09kcxccw2gkf4c3w7sxgb7v3gwbvahvx9wgq8f93q85yzg95"))))
+ (properties `((upstream-name . "AnnotationHubData")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'install 'change-home-dir
+ (lambda _
+ ;; Change from /homeless-shelter to /tmp for write permission.
+ (setenv "HOME" "/tmp"))))))
+ (propagated-inputs
+ (list r-annotationdbi
+ r-annotationforge
+ r-annotationhub
+ r-biobase
+ r-bioccheck
+ r-biocgenerics
+ r-biocmanager
+ r-biocviews
+ r-biostrings
+ r-dbi
+ r-futile-logger
+ r-genomeinfodb
+ r-genomicfeatures
+ r-genomicranges
+ r-graph
+ r-iranges
+ r-jsonlite
+ r-organismdbi
+ r-rcurl
+ r-rsamtools
+ r-rsqlite
+ r-rtracklayer
+ r-s4vectors
+ r-xml))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/AnnotationHubData")
+ (synopsis "Transform public data resources into Bioconductor data structures")
+ (description
+ "These recipes convert a wide variety and a growing number of public bioinformatic
+data sets into easily-used standard Bioconductor data structures.")
+ (license license:artistic2.0)))
+
(define-public r-anvil
(package
(name "r-anvil")