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envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches Date: Tue, 28 Feb 2023 01:07:34 +0100 Subject: [PATCH] gnu: Add r-chromomap. * gnu/packages/cran.scm (r-chromomap): New variable. --- gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) base-commit: 9ae4846c502b75867b83180bb65d422ff838e4e6 diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c80e98134a..5af741674c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -306,6 +306,42 @@ (define-public r-changepoint ;; Any version of the GPL. (license license:gpl3+))) +;; The package sources include multiple non-mified js and v5.1.0 variant of d3.js +;; The d3.js file is also non-minified and the file mention the version and the +;; home-page. +(define-public r-chromomap + (package + (name "r-chromomap") + (version "4.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "chromoMap" version)) + (sha256 + (base32 "1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43")))) + (properties `((upstream-name . "chromoMap"))) + (build-system r-build-system) + (propagated-inputs (list r-htmltools r-htmlwidgets)) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=chromoMap") + (synopsis "Interactive genomic visualization of biological data") + (description + "This package provides interactive, configurable and graphics visualization +of the chromosome regions of any living organism allowing users to map chromosome +elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special +plot viz. the \"chromosome heatmap\" that, in addition to mapping elements, can +visualize the data associated with chromosome elements (like gene expression) in +the form of heat colors. Users can investigate the detailed information about the +mappings (like gene names or total genes mapped on a location) or can view the +magnified single or double stranded view of the chromosome at a location showing +each mapped element in sequential order. The package provide multiple features +like visualizing multiple sets, chromosome heat-maps, group annotations, adding +hyperlinks, and labelling. The plots can be saved as HTML documents that can be +customized and shared easily. In addition, you can include them in R Markdown or +in R Shiny applications.") + (license (list license:gpl3 + license:isc )))) ;; for d3 bundled js + (define-public r-collections (package (name "r-collections")