From patchwork Mon Feb 27 23:37:16 2023 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: =?utf-8?b?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= X-Patchwork-Id: 47463 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 4164416C03; Mon, 27 Feb 2023 23:38:22 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.8 required=5.0 tests=DKIM_INVALID,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H2,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 8627E16884 for ; Mon, 27 Feb 2023 23:38:19 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1pWn4I-0005jt-Kj; Mon, 27 Feb 2023 18:38:06 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pWn4G-0005gs-TU for guix-patches@gnu.org; Mon, 27 Feb 2023 18:38:05 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pWn4G-0008GH-C2 for guix-patches@gnu.org; Mon, 27 Feb 2023 18:38:04 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pWn4E-0004OQ-7U; Mon, 27 Feb 2023 18:38:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#61838] [PATCH v2 03/13] gnu: Add r-n2r. References: <669c9a4b05f74824b87f3bb57fd23c98@mdc-berlin.de> In-Reply-To: <669c9a4b05f74824b87f3bb57fd23c98@mdc-berlin.de> Resent-From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Mon, 27 Feb 2023 23:38:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 61838 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <61838@debbugs.gnu.org> Cc: rekado@elephly.net X-Debbugs-Original-Xcc: rekado@elephly.net Received: via spool by 61838-submit@debbugs.gnu.org id=B61838.167754106416854 (code B ref 61838); Mon, 27 Feb 2023 23:38:02 +0000 Received: (at 61838) by debbugs.gnu.org; 27 Feb 2023 23:37:44 +0000 Received: from localhost ([127.0.0.1]:49208 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWn3v-0004Nl-Mo for submit@debbugs.gnu.org; Mon, 27 Feb 2023 18:37:43 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:35117) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pWn3r-0004NS-5M for 61838@debbugs.gnu.org; Mon, 27 Feb 2023 18:37:42 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1677541051; x=1679355452; bh=xpEmuGiR036TO6W lCMFwizZcEl4aIyzbjr7M7LUkqsU=; b=fcf1r31iCkuJBpmQSRoTl+N11FVupGN gWPTns6R5mwlCA9n8GG+NctVwHBCJOBR3BV2GL8Eggd6eXhxgJQXMITnpiHTPbEQ Fv7EZWq4vBhSzoKwvAx0BGnfYQuUkmIHxEPEHPXBg2Lq7MkI/UFxhnjMNiTBANna YgCSARCB+z34= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 6C09D300195 for <61838@debbugs.gnu.org>; Tue, 28 Feb 2023 00:37:30 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.21; Tue, 28 Feb 2023 00:37:29 +0100 From: =?utf-8?b?TcSDZMSDbGlu?= Ionel =?utf-8?b?UGF0cmHImWN1?= Date: Tue, 28 Feb 2023 00:37:16 +0100 Message-ID: <20230227233716.2455-1-madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.39.1 MIME-Version: 1.0 X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27474.003 X-TM-AS-Result: No-10--2.184600-5.000000 X-TMASE-MatchedRID: a3KJLn6RIiL/R1NSMc2qCdfeP+V/VXwsdG11gm9qhi4li8Y5a0svL78F Hrw7frluf146W0iUu2vNs+hSjQLHECq+GZ9ZHxIhuW77/y896siFzNNPDc6umBHfiujuTbedCTE bKh6GrsEF2dkz2WOwqgKguJ8dND77+wOdDq3DYSHjpxdo/JwVm8oioCrSMgeK7rencS+jsJgjL8 WDWZGeoqEbr6VH4TuZmyiLZetSf8mfop0ytGwvXiq2rl3dzGQ1GpeevGsoI5fB5Wk2oJGHXV6o5 oQSXoBCJH7HzNMBQY0ripNbToAUhAGWEAqI1/jKVZxxGQafovVFdJd49zQDPE+Q9lTIoWXygLtN +XVTSX0NQSQFNny84vGXJMJdBHjGKgDk8Dh1C7G5iklHaSF5d37cGd19dSFd X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.184600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27474.003 X-TM-SNTS-SMTP: 392499B802896792CEEA747C4BDA9FBF29D100058A01BADAA160C1889429341B2002:F X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-n2r): New variable. Changes from v1: - [description]: Changed the description after the Ricardo's observation. I hope that this is solve the issue. --- gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) base-commit: 4db367f8ae4e704784ced52b552437ca00b94b89 prerequisite-patch-id: edae0018d5bb597484681580e87ff4e84d3e4f97 prerequisite-patch-id: fe2fd38a8a277bb9352431960ff6322e66f56895 diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index f5dc9c3980..29f11bf3de 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8334,6 +8334,32 @@ (define-public r-tinytest ") (license license:gpl3))) +(define-public r-n2r + (package + (name "r-n2r") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "N2R" version)) + (sha256 + (base32 "12bv7xx6j6222qgpv6g61i68017fz0x6fjg9a9k5yhgw3zk05hpk")))) + (properties `((upstream-name . "N2R"))) + (build-system r-build-system) + (propagated-inputs + (list r-matrix + r-rcpp + r-rcppeigen + r-rcppspdlog)) + (home-page "https://github.com/kharchenkolab/N2R") + (synopsis "Fast and scalable approximate k-Nearest Neighbor search methods") + (description + "This package implements methods to perform fast approximate K-nearest neighbor +search on the input matrix. The algorithm is based on the N2 implementation of an +approximate nearest neighbor search using hierarchical @acronym{NSW, Navigable Small +World} graphs.") + (license license:asl2.0))) + (define-public r-network (package (name "r-network")