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(license license:expat))) +(define-public r-sccore + (package + (name "r-sccore") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "sccore" version)) + (sha256 + (base32 "12gm7pb6xbvf9kdsgl7ldw1c54ga9fgk99ps2kx2cq91q9m0ld4r")))) + (properties `((upstream-name . "sccore"))) + (build-system r-build-system) + (propagated-inputs + (list r-dplyr + r-ggplot2 + r-ggrepel + r-igraph + r-irlba + r-magrittr + r-matrix + r-pbmcapply + r-proc + r-rcpp + r-rcpparmadillo + r-rcppeigen + r-rcppprogress + r-rlang + r-scales + r-tibble + r-uwot + r-withr)) + (home-page "https://github.com/kharchenkolab/sccore") + (synopsis "Core utilities for single-cell RNA-Seq") + (description + "This package implements core utilities for single-cell RNA-seq data analysis. +Contained within are utility functions for working with @acronym{DE, differential +expression} matrices and count matrices, a collection of functions for manipulating +and plotting data via ggplot2, and functions to work with cell graphs and cell +embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP, +collapsing vertices of each cluster in the graph, and propagating graph labels.") + (license license:gpl3))) + (define-public r-scs (package (name "r-scs")