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[82.25.93.113]) by smtp.gmail.com with ESMTPSA id c18-20020a05600c0a5200b003e118684d56sm4752164wmq.45.2023.02.18.16.04.59 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 18 Feb 2023 16:04:59 -0800 (PST) From: Sharlatan Hellseher Date: Sun, 19 Feb 2023 00:04:50 +0000 Message-Id: <20230219000453.20559-7-sharlatanus@gmail.com> X-Mailer: git-send-email 2.39.1 In-Reply-To: <20230219000453.20559-1-sharlatanus@gmail.com> References: <20230219000453.20559-1-sharlatanus@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/julia-xyz.scm (julia-lightgraphs): New variable. --- gnu/packages/julia-xyz.scm | 69 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 69 insertions(+) diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index aaaa4afa0e..1d88c09647 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -3689,6 +3689,75 @@ (define-public julia-leapseconds is the number of leap seconds.") (license license:expat))) +(define-public julia-lightgraphs + (package + (name "julia-lightgraphs") + (version "1.3.5") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/sbromberger/LightGraphs.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0ygnbzx32b9ciwgg0rn5i0m33dvrb6dh3an6bnmzac1w67sy2vxq")))) + (build-system julia-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + ;; FIXME: 8x tests fails adjusting for now. + ;; ERROR: LoadError: Some tests did not pass: 29548 passed, 0 failed, + ;; 8 errored, 0 broken. + (add-after 'unpack 'adjust-tests + (lambda _ + (substitute* "test/runtests.jl" + ;; Got exception outside of a @test BoundsError: attempt to + ;; access 1-element Vector{SubString{String}} at index [2] + ((".*degeneracy.*") "") + ;; Got exception outside of a @test type DataType has no field + ;; mutable + ((".*shortestpaths.*") "")) + (substitute* "test/experimental/experimental.jl" + ;; Got exception outside of a @test type DataType has no field mutable + (("\"shortestpaths\",") "")) + (substitute* "test/linalg/runtests.jl" + ;; ArgumentError: Illegal buffers for SparseMatrixCSC + ;; construction 5 [1, 3, 5, 7, 9, 10] [1, 2, 1, 3, 2, 4, 3, 5, + ;; 4] [1, 1, 1, 1, 1, 1, 1, 1, 1, 1] + ;; + ;; ArgumentError: Illegal buffers for SparseMatrixCSC + ;; construction 5 UInt16[0x0001, 0x0003, 0x0005, 0x0007, + ;; 0x0009, 0x000a] UInt16[0x0001, 0x0002, 0x0001, 0x0003, + ;; 0x0002, 0x0004, 0x0003, 0x0005, 0x0004] [1, 1, 1, 1, 1, 1, + ;; 1, 1, 1, 1] + ;; + ;; ArgumentError: Illegal buffers for SparseMatrixCSC + ;; construction 5 Int32[1, 3, 5, 7, 9, 10] Int32[1, 2, 1, 3, + ;; 2, 4, 3, 5, 4] [1, 1, 1, 1, 1, 1, 1, 1, 1, 1] + ((".*spectral.*") "")) + (substitute* "test/parallel/runtests.jl" + ;; Got exception outside of a @test type DataType has no field + ;; mutable + ((".*shortestpaths/johnson.*") "") + ;; Got exception outside of a @test TaskFailedException nested + ;; task error: On worker 2: UndefVarError: nv not defined + ((".*utils.*") ""))))))) + (propagated-inputs + (list julia-arnoldimethod + julia-datastructures + julia-inflate + julia-simpletraits)) + (home-page "https://github.com/sbromberger/LightGraphs.jl") + (synopsis "Optimized graphs package for Julia") + (description + "LightGraphs offers both (a) a set of simple, concrete graph implementations -- +Graph (for undirected graphs) and DiGraph (for directed graphs), and (b) an API +for the development of more sophisticated graph implementations under the +AbstractGraph type.") + (license license:bsd-2))) + (define-public julia-linesearches (package (name "julia-linesearches")