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Resent-From: Navid Afkhami Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 09 Feb 2023 08:13:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 61382 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 61382@debbugs.gnu.org X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.167593037629712 (code B ref -1); Thu, 09 Feb 2023 08:13:02 +0000 Received: (at submit) by debbugs.gnu.org; 9 Feb 2023 08:12:56 +0000 Received: from localhost ([127.0.0.1]:57354 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pQ235-0007j9-J8 for submit@debbugs.gnu.org; Thu, 09 Feb 2023 03:12:55 -0500 Received: from lists.gnu.org ([209.51.188.17]:58850) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pQ233-0007iu-Hh for submit@debbugs.gnu.org; Thu, 09 Feb 2023 03:12:54 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pQ230-0006WW-Aq for guix-patches@gnu.org; Thu, 09 Feb 2023 03:12:51 -0500 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1pQ22y-00012X-QZ for guix-patches@gnu.org; Thu, 09 Feb 2023 03:12:50 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1675930366; x=1677744767; bh=e//cZ5jj09E9hX5 oponLnxssGKxZq9tZOTyGjH4ccNA=; b=J36tnVssIDnAgeQB8Ixe7NiW0GZ9q/P zffx+eXSjIzvnGUhbx/e31Hc1RjEXyvtVO/fMP9RgtTv8vBtnXy4wzLJ44rMKsT3 wnhUUq4pKvgEPlIYwLa0WvEQfhU/rvZ4ftLDtqpR6IqBKp7IM8tZ/0P+/6mHOfkc nKdbYdnE0r3Y= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 4F233A00E5 for ; Thu, 9 Feb 2023 09:12:46 +0100 (CET) Received: from localhost.localdomain (10.84.128.29) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.17; Thu, 9 Feb 2023 09:12:45 +0100 From: Navid Afkhami Date: Thu, 9 Feb 2023 09:12:34 +0100 Message-ID: <20230209081235.30512-1-navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 X-Originating-IP: [10.84.128.29] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27436.006 X-TM-AS-Result: No-10-0.692300-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnd6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VIPc XuILVCbaRRa406V/YwyBUGewL2YXt9GklfnQcKumwLYk+NSxc5r4qCLIu0mtIL9NdlMbI5hontU 3Lv5Rb/1Bh00zu6DygRJTjjs9yT6Yo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgKIzdZS3ou0UvU+ OKagS8dAJT1QwbGXhR+pCqRU+IB84ofghShQpram3VdrKCeQPm8uD6Y7nXL1piDRNquN7ycY5Lm YMppxFz4MJBeB13AbVZKCalsVmcQjWQPYq1JOarY9u3lK2/Yrn87HRNT0KLkg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.692300-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27436.006 X-TM-SNTS-SMTP: 5BA75D6F85F820B9D17541E76CE53BC0A2FEEDC0074FD0B97035C8AF4C647FB42002:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (python-scrublet): New variable. --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 969b978054..05a078b0b0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3459,6 +3459,32 @@ (define-public python-scikit-bio resources for bioinformatics.") (license license:bsd-3))) +(define-public python-scrublet + (package + (name "python-scrublet") + (version "0.2.3") + (source (origin + (method url-fetch) + (uri (pypi-uri "scrublet" version)) + (sha256 + (base32 + "0fk5pwk12yz9wpvwkl6j2l2g28f3x35b9r9n5bw6f0i9f0qgd191")))) + (build-system python-build-system) + (propagated-inputs (list python-annoy + python-cython + python-matplotlib + python-numba + python-numpy + python-pandas + python-scikit-image + python-scikit-learn + python-scipy + python-umap-learn)) + (home-page "https://github.com/swolock/scrublet") + (synopsis "single-cell tool to indentify and remove doublets") + (description "Tool for identifying and removing doublets in single-cell RNA-seq data.") + (license license:expat))) + (define-public cwltool (package (name "cwltool")