@@ -8229,6 +8229,50 @@ (define-public r-doubletcollection
benchmark of those eight mentioned methods.")
(license license:gpl3+))))
+(define-public r-psupertime
+ (let ((commit "73825a28d3bd9bc881c15ee0c4c218eec1c9c207")
+ (revision "1"))
+ (package
+ (name "r-psupertime")
+ (version (git-version "0.2.6" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/wmacnair/psupertime")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "00h1r3ffz6m9dwcgkvyki8405b059qn6mnjsd8d76a1rabaf2vfh"))))
+ (properties `((upstream-name . "psupertime")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-cowplot
+ r-data-table
+ r-fastcluster
+ r-forcats
+ r-ggplot2
+ r-glmnet
+ r-knitr
+ r-matrix
+ r-rcolorbrewer
+ r-scales
+ r-scran
+ r-singlecellexperiment
+ r-stringr
+ r-summarizedexperiment
+ r-topgo))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/wmacnair/psupertime")
+ (synopsis
+ "Psupertime is supervised pseudotime for single cell RNAseq data")
+ (description
+ "Psupertime uses single cell RNAseq data, where the cells have a known ordering.
+This ordering helps to identify a small number of genes which place
+cells in that known order. It can be used for discovery of relevant
+genes, for identification of subpopulations, and characterization of
+further unknown or differently labelled data.")
+ (license license:gpl3))))
+
(define-public r-pando
(package
(name "r-pando")